====================== Début: 2024.05.11 22h01m10s ====================== nettoyage: 1er find: nettoyage: 2e find: ================================= Informations sur l'environnement: ================================= ulimit -a: real-time non-blocking time (microseconds, -R) unlimited core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 515024 max locked memory (kbytes, -l) 8192 max memory size (kbytes, -m) unlimited open files (-n) 500000 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) 8192 cpu time (seconds, -t) unlimited max user processes (-u) 515024 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited hostname -I: 10.1.1.46 132.203.7.103 172.17.0.1 172.18.0.1 uname -a: Linux compile 6.2.15-100.fc36.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 11 16:51:53 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux ================================= Les arguments passés à ce script: La variable PATH contient: /opt/openmpi-4.0.7/bin:/usr/local/bin:/bin:/usr/bin:/opt/intel/oneapi/mkl/2024.0/bin/:/usr/local/bin:/usr/bin La variable LD_LIBRARY_PATH contient: /opt/openmpi-4.0.7/lib:/pmi/Indus/pgi-14.7-EL5/linux86-64/14.7/libso:/opt/intel/oneapi/mkl/2024.0/lib: La variable BASH contient: /usr/bin/bash ====================== env donne: autocopie=1 autre_message_dans_bilan=Voici les logs de Petsc:\nSHA du dépôt (si applicable): ${GIT_COMMIT_PETSC}\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_RDict.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_test.log\n - 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root 0 -20 0 0 0 I 0.0 0.0 0:00.59 kworker+ 535 root 0 -20 0 0 0 I 0.0 0.0 0:00.49 kworker+ 536 root 0 -20 0 0 0 I 0.0 0.0 0:00.53 kworker+ 539 root 0 -20 0 0 0 I 0.0 0.0 0:00.76 kworker+ 547 root 0 -20 0 0 0 I 0.0 0.0 0:00.25 kworker+ 561 root 0 -20 0 0 0 I 0.0 0.0 0:00.42 kworker+ 569 root 0 -20 0 0 0 I 0.0 0.0 0:03.37 kworker+ 571 root 0 -20 0 0 0 I 0.0 0.0 0:00.27 kworker+ 683 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kdmflus+ 684 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kdmflus+ 707 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfsalloc 708 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs_mru+ 709 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-buf+ 710 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-con+ 711 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-rec+ 712 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-blo+ 713 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-ino+ 714 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-log+ 715 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xfs-cil+ 716 root 20 0 0 0 0 S 0.0 0.0 0:03.15 xfsaild+ 783 root 0 -20 0 0 0 I 0.0 0.0 0:00.73 kworker+ 831 root 20 0 167344 101184 100224 S 0.0 0.1 0:07.09 systemd+ 835 root 0 -20 0 0 0 I 0.0 0.0 0:00.40 kworker+ 845 root 20 0 33552 9984 7488 S 0.0 0.0 0:01.20 systemd+ 846 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 rpciod 847 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 xprtiod 941 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ipmi-ms+ 958 root 39 19 0 0 0 S 0.0 0.0 0:00.00 kipmi0 1021 root 20 0 0 0 0 S 0.0 0.0 0:00.00 jbd2/sd+ 1022 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ext4-rs+ 1038 rpc 20 0 13148 5568 4800 S 0.0 0.0 0:00.16 rpcbind 1039 systemd+ 20 0 18036 7872 6912 S 0.0 0.0 2:02.44 systemd+ 1040 systemd+ 20 0 22184 13056 10944 S 0.0 0.0 0:01.16 systemd+ 1041 root 16 -4 109200 3504 2880 S 0.0 0.0 0:01.80 auditd 1047 root 20 0 5488 2496 2112 S 0.0 0.0 0:00.06 nfsdcld 1049 root 16 -4 7716 2880 2688 S 0.0 0.0 0:00.49 sedispa+ 1070 dbus 20 0 10952 4780 3840 S 0.0 0.0 0:00.03 dbus-br+ 1071 dbus 20 0 5932 3352 2304 S 0.0 0.0 0:02.41 dbus-br+ 1072 avahi 20 0 20028 4608 4224 S 0.0 0.0 0:00.38 avahi-d+ 1075 root 20 0 356680 42544 18240 S 0.0 0.0 0:01.23 firewal+ 1076 root 20 0 79252 2880 2688 S 0.0 0.0 0:15.79 irqbala+ 1077 root 20 0 3284 1728 1728 S 0.0 0.0 0:00.05 mcelog 1078 daemon 20 0 319692 8256 6720 S 0.0 0.0 0:50.72 rngd 1079 root 20 0 805896 44140 43180 S 0.0 0.0 0:13.46 rsyslogd 1080 root 20 0 11880 5568 4224 S 0.0 0.0 0:00.13 smartd 1082 avahi 20 0 19756 1168 960 S 0.0 0.0 0:00.00 avahi-d+ 1088 chrony 20 0 85272 3848 3264 S 0.0 0.0 0:00.28 chronyd 1114 root 20 0 35636 8640 7680 S 0.0 0.0 0:02.11 systemd+ 1131 root 20 0 475840 19772 17468 S 0.0 0.0 0:04.94 Network+ 1150 root 20 0 15700 9024 7872 S 0.0 0.0 0:00.30 sshd 1152 icecc 25 5 14896 6528 5952 S 0.0 0.0 0:06.29 iceccd 1155 rpcuser 20 0 9696 2984 2304 S 0.0 0.0 0:00.01 rpc.sta+ 1159 root 20 0 2835584 47164 30528 S 0.0 0.0 1:25.13 contain+ 1162 root 20 0 336420 5692 3988 S 0.0 0.0 0:00.05 gssproxy 1178 root 20 0 3424 1728 1728 S 0.0 0.0 0:00.00 atd 1194 root 20 0 17460 7104 6336 S 0.0 0.0 0:00.00 systemd+ 1200 root 20 0 221872 1728 1728 S 0.0 0.0 0:00.01 agetty 1214 root 20 0 13784 1792 1152 S 0.0 0.0 0:00.00 xinetd 1220 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ib-comp+ 1221 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ib-comp+ 1222 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ib_mcast 1223 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ib_nl_s+ 1232 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 rdma_cm 1259 root 20 0 233536 3648 2880 S 0.0 0.0 0:00.21 crond 1344 root 20 0 45492 2532 1728 S 0.0 0.0 0:00.48 master 1349 postfix 20 0 57448 7296 6336 S 0.0 0.0 0:00.17 qmgr 1381 polkitd 20 0 2940856 22748 18016 S 0.0 0.0 0:01.98 polkitd 1642 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 nfsiod 2158 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kdmflus+ 2160 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kcryptd+ 2161 root 0 -20 0 0 0 I 0.0 0.0 0:00.40 kcryptd+ 2162 root 20 0 0 0 0 S 0.0 0.0 0:37.94 dmcrypt+ 2176 root 20 0 0 0 0 S 0.0 0.0 0:17.18 jbd2/dm+ 2177 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 ext4-rs+ 2182 root 20 0 244092 11136 9408 S 0.0 0.0 0:00.20 sssd 2183 root 20 0 245820 15632 12944 S 0.0 0.0 0:03.24 sssd_be 2184 root 20 0 277908 46656 44928 S 0.0 0.0 0:01.83 sssd_nss 2185 root 20 0 244808 11136 9600 S 0.0 0.0 0:05.35 sssd_pam 2186 root 20 0 243220 10560 9216 S 0.0 0.0 0:00.70 sssd_au+ 2202 root 20 0 636376 10560 8448 S 0.0 0.0 0:00.62 automou+ 2226 root 20 0 13396 3196 1536 S 0.0 0.0 0:00.12 rpc.mou+ 2229 root 20 0 0 0 0 S 0.0 0.0 0:00.00 lockd 2230 root 20 0 0 0 0 S 0.0 0.0 0:08.97 nfsd 2231 root 20 0 0 0 0 S 0.0 0.0 0:11.47 nfsd 2232 root 20 0 0 0 0 S 0.0 0.0 0:14.04 nfsd 2233 root 20 0 0 0 0 S 0.0 0.0 0:08.76 nfsd 2234 root 20 0 0 0 0 S 0.0 0.0 0:12.24 nfsd 2235 root 20 0 0 0 0 S 0.0 0.0 0:19.49 nfsd 2236 root 20 0 0 0 0 S 0.0 0.0 0:36.88 nfsd 2237 root 20 0 0 0 0 S 0.0 0.0 1:21.64 nfsd 2322 root 20 0 0 0 0 S 0.0 0.0 0:05.81 NFSv4 c+ 2665 root 20 0 0 0 0 I 0.0 0.0 0:06.77 ipvs-e:+ 2749 root 20 0 0 0 0 I 0.0 0.0 0:06.81 ipvs-e:+ 2781 root 20 0 720752 10496 7680 S 0.0 0.0 0:19.00 contain+ 2803 root 20 0 7400 3456 3072 S 0.0 0.0 0:00.35 bash 2900 root 20 0 36912 24920 4032 S 0.0 0.0 0:24.13 supervi+ 2928 root 20 0 21932 9216 7680 S 0.0 0.0 0:00.23 sssd 2929 root 20 0 4436 3072 2880 S 0.0 0.0 0:00.00 bash 2930 root 20 0 5832 2880 2304 S 0.0 0.0 0:00.14 crond 2931 root 20 0 4436 3072 2880 S 0.0 0.0 0:22.00 bash 2932 cockpit+ 20 0 6904 4032 3840 S 0.0 0.0 0:01.78 icecc-s+ 2934 root 20 0 13980 8064 7104 S 0.0 0.0 0:00.30 sshd 2935 cockpit+ 20 0 14200 6336 5760 S 0.0 0.0 0:06.49 iceccd 2936 dbus 20 0 7784 4032 3840 S 0.0 0.0 0:00.63 dbus-da+ 3086 root 20 0 25864 15480 12840 S 0.0 0.0 0:02.54 sssd_be 3092 root 20 0 55948 44928 43392 S 0.0 0.0 0:01.18 sssd_nss 3093 root 20 0 24580 11520 10368 S 0.0 0.0 0:02.38 sssd_pam 3094 root 20 0 20952 8640 7680 S 0.0 0.0 0:00.74 sssd_au+ 3096 root 20 0 47092 4104 3264 S 0.0 0.0 0:00.51 master 3098 postfix 20 0 47624 8448 7488 S 0.0 0.0 0:00.12 qmgr 4730 root 20 0 4436 3072 2880 S 0.0 0.0 0:00.00 bash 4780 firebird 20 0 206776 6192 4992 S 0.0 0.0 0:25.77 munged 4815 colord 20 0 4996996 47800 7680 S 0.0 0.0 1:16.76 slurmct+ 4820 colord 20 0 18628 2688 2304 S 0.0 0.0 0:00.00 slurmsc+ 4831 root 20 0 810436 6428 4608 S 0.0 0.0 0:08.86 slurmd 4832 root 20 0 2876 1344 1344 S 0.0 0.0 0:02.87 tail 3026658 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 3027979 root 20 0 0 0 0 I 0.0 0.0 0:01.33 kworker+ 3030276 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3034977 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3035665 root 20 0 0 0 0 I 0.0 0.0 0:00.56 kworker+ 3037813 root 20 0 0 0 0 I 0.0 0.0 0:00.26 kworker+ 3038139 root 20 0 0 0 0 I 0.0 0.0 0:00.10 kworker+ 3039176 root 20 0 0 0 0 I 0.0 0.0 0:00.20 kworker+ 3041146 root 20 0 0 0 0 I 0.0 0.0 0:00.26 kworker+ 3041953 root 20 0 0 0 0 I 0.0 0.0 0:00.28 kworker+ 3042010 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3042601 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 3042865 root 20 0 0 0 0 I 0.0 0.0 0:01.46 kworker+ 3042869 root 20 0 0 0 0 I 0.0 0.0 0:00.29 kworker+ 3043356 root 20 0 0 0 0 I 0.0 0.0 0:00.28 kworker+ 3043429 root 20 0 0 0 0 I 0.0 0.0 0:00.23 kworker+ 3043766 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3045050 root 20 0 0 0 0 I 0.0 0.0 0:01.08 kworker+ 3045756 root 20 0 0 0 0 I 0.0 0.0 0:01.56 kworker+ 3045839 root 20 0 0 0 0 I 0.0 0.0 0:00.38 kworker+ 3046235 root 20 0 0 0 0 I 0.0 0.0 0:00.28 kworker+ 3046492 root 20 0 0 0 0 I 0.0 0.0 0:02.28 kworker+ 3046494 root 20 0 0 0 0 I 0.0 0.0 0:01.10 kworker+ 3047413 root 20 0 0 0 0 I 0.0 0.0 0:02.85 kworker+ 3047460 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 3047468 root 20 0 0 0 0 I 0.0 0.0 0:00.78 kworker+ 3047582 root 20 0 0 0 0 I 0.0 0.0 0:02.44 kworker+ 3073143 root 20 0 0 0 0 I 0.0 0.0 0:27.89 kworker+ 3113541 root 20 0 0 0 0 I 0.0 0.0 0:00.90 kworker+ 3116615 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3128024 root 20 0 0 0 0 I 0.0 0.0 0:01.47 kworker+ 3140812 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 3140877 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3140878 root 20 0 0 0 0 I 0.0 0.0 0:00.20 kworker+ 3154257 root 20 0 0 0 0 I 0.0 0.0 0:00.74 kworker+ 3157891 root 20 0 0 0 0 I 0.0 0.0 0:01.73 kworker+ 3191309 root 20 0 0 0 0 I 0.0 0.0 0:00.47 kworker+ 3206133 root 20 0 0 0 0 I 0.0 0.0 0:00.13 kworker+ 3206134 root 20 0 0 0 0 I 0.0 0.0 0:00.13 kworker+ 3225150 postfix 20 0 58876 8640 7680 S 0.0 0.0 0:00.01 pickup 3334229 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3334232 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3533493 root 20 0 0 0 0 I 0.0 0.0 0:09.40 kworker+ 3639831 root 20 0 0 0 0 I 0.0 0.0 0:00.70 kworker+ 3906242 root 20 0 0 0 0 I 0.0 0.0 0:01.33 kworker+ 3910093 root 20 0 0 0 0 I 0.0 0.0 0:00.76 kworker+ 3910401 root 20 0 0 0 0 I 0.0 0.0 0:01.06 kworker+ 3911643 root 20 0 0 0 0 I 0.0 0.0 0:01.57 kworker+ 3915740 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3915749 root 20 0 0 0 0 I 0.0 0.0 0:00.91 kworker+ 3915942 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3916044 root 20 0 0 0 0 I 0.0 0.0 0:00.79 kworker+ 3916214 root 20 0 0 0 0 I 0.0 0.0 0:00.10 kworker+ 3916450 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 3916785 root 20 0 0 0 0 I 0.0 0.0 0:00.05 kworker+ 3916867 root 20 0 0 0 0 I 0.0 0.0 0:00.14 kworker+ 3917104 root 20 0 253064 7192 5568 S 0.0 0.0 0:00.00 crond 3917113 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917114 cmpbib 20 0 20508 11328 9600 S 0.0 0.0 0:00.15 systemd 3917119 cmpbib 20 0 194080 6504 1728 S 0.0 0.0 0:00.00 (sd-pam) 3917139 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917140 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917144 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3917155 cmpbib 20 0 223072 3264 3072 S 0.0 0.0 0:00.00 sh 3917157 cmpbib 20 0 13424 3072 2880 S 0.0 0.0 0:00.01 bash 3917158 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 3917174 cmpbib 20 0 232300 3456 3264 S 0.0 0.0 0:00.00 bash 3917189 cmpbib 20 0 234048 4224 3456 S 0.0 0.0 0:00.12 bash 3917219 cmpbib 20 0 7508 3972 3264 S 0.0 0.0 0:00.07 ssh-age+ 3917300 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 3917303 root 20 0 271880 40260 8448 S 0.0 0.0 0:00.21 sssd_kcm 3917304 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 3917305 root 20 0 0 0 0 I 0.0 0.0 0:00.10 kworker+ 3917306 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 3917309 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3917310 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 3917315 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 3917316 postfix 20 0 57260 7488 6528 S 0.0 0.0 0:00.00 pickup 3917356 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3917357 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 3917358 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3917359 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 3917361 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917362 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917363 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917366 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 3917377 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 3917525 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 3917526 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 3917741 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917889 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3917891 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3917934 root 20 0 2844 1536 1536 S 0.0 0.0 0:00.00 sleep 3917936 cmpbib 20 0 13424 3264 3072 S 0.0 0.0 0:00.00 bash 3917948 cmpbib 20 0 232300 3456 3264 S 0.0 0.0 0:00.00 bash 3917963 cmpbib 20 0 232828 4032 3456 S 0.0 0.0 0:00.01 bash 3917982 cmpbib 20 0 235704 4416 3456 R 0.0 0.0 0:00.01 top ====================== df -h donne: Filesystem Size Used Avail Use% Mounted on devtmpfs 4.0M 0 4.0M 0% /dev tmpfs 63G 0 63G 0% /dev/shm tmpfs 26G 2.0M 26G 1% /run /dev/mapper/fedora_fsg--magellan-root 33G 23G 11G 70% / tmpfs 63G 19M 63G 1% /tmp /dev/sdc1 974M 238M 670M 27% /boot /dev/mapper/pmi_crypte 916G 544G 326G 63% /pmi :/d2/users/cmpbib 9.1T 2.5T 6.2T 29% /users/cmpbib :/d1/users/cmpgiref 917G 671G 200G 78% /users/cmpgiref tmpfs 13G 4.0K 13G 1% /run/user/40031 ====================== ====================== Nous avons le process group id: 3917155 On a tous ces dépôts a prendre en compte: GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation depots_a_compiler: GIREF BIB InterfaceQtVTK doit_avoir_depots_non_propres ne contient rien... on y met: 0 Agent pid 3917991 SSH_AGENT_PID: 3917991 Identity added: /users/cmpbib/.ssh/id_dsa_giref (/users/cmpbib/.ssh/id_dsa_giref) Identity added: /users/cmpbib/.ssh/id_rsa_giref (/users/cmpbib/.ssh/id_rsa_giref) Configuration des modes pour GIREF depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour TestValidation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour Validation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour InterfaceQtVTK depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour webMEF depots_modes ne contient rien... on y met: opt Configuration des modes pour BIB depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour BIBTestValidation depots_modes ne contient rien... on y met: opt dev nb_proc contient: 24 nb_proc_app ne contient rien... on y met: 24 nb_proc_TV contient: 12 Préparation des 1 dépôts (GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation) dans le map liste_depots. ----------------------------- Traitements pour le dépot GIREF On va 'fetcher' le dépôt GIREF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cleared directory 'dep/CLI11' Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) unregistered for path 'dep/CLI11' Cleared directory 'dep/picojson' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) unregistered for path 'dep/picojson' Cleared directory 'dep/pybind11' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) unregistered for path 'dep/pybind11' Cleared directory 'dep/rapidjson' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) unregistered for path 'dep/rapidjson' Cleared directory 'dep/spdlog' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) unregistered for path 'dep/spdlog' On valide le dépôt GIREF avec la référence: a6997f1dd6735db049ce4b5abb3af7b41012d3af HEAD is now at a6997f1dd6 BUG (maintenance, !1588): Résout un bogue en lien avec une macro non définie. Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) registered for path 'dep/CLI11' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) registered for path 'dep/picojson' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) registered for path 'dep/pybind11' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) registered for path 'dep/rapidjson' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) registered for path 'dep/spdlog' Submodule path 'dep/CLI11': checked out '4af78beef777e313814b4daff70e2da9171a385a' Submodule path 'dep/picojson': checked out '111c9be5188f7350c2eac9ddaedd8cca3d7bf394' Submodule path 'dep/pybind11': checked out '2fb3d7cbde264a0b3f921e802f287195387e8263' Submodule path 'dep/rapidjson': checked out '083f359f5c36198accc2b9360ce1e32a333231d9' Submodule path 'dep/spdlog': checked out 'ad0e89cbfb4d0c1ce4d097e134eb7be67baebb36' On nettoie le dépôt GIREF: On demande ce range : 5b5c9eff83800b01285cd04b066a13bda61dc79a..a6997f1dd6735db049ce4b5abb3af7b41012d3af ----------------------------- ----------------------------- Traitements pour le dépot TestValidation On va 'fetcher' le dépôt TestValidation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt TestValidation avec la référence: ffed3300962b2a4a2f230b4fb0268ac109f61383 HEAD is now at ffed33009 AQL (IC, !649): Ajoute un message explicite de l'erreur. On nettoie le dépôt TestValidation: On demande ce range : 3848d4df106945ebc72a1ee96ff348cd8c5dae3a..ffed3300962b2a4a2f230b4fb0268ac109f61383 ----------------------------- ----------------------------- Traitements pour le dépot Validation On va 'fetcher' le dépôt Validation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt Validation avec la référence: d43c1b3c6ee271a49b6fe5ebe8efe80ffc26feae HEAD is now at d43c1b3 FCT (mefpp#1737, !8): met à jour le format de fichier pour .enti On nettoie le dépôt Validation: On demande ce range : d43c1b3c6ee271a49b6fe5ebe8efe80ffc26feae..d43c1b3c6ee271a49b6fe5ebe8efe80ffc26feae ----------------------------- ----------------------------- Traitements pour le dépot InterfaceQtVTK On va 'fetcher' le dépôt InterfaceQtVTK avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt InterfaceQtVTK avec la référence: 3c73ef85983ae15311648d63490ff228d1bad917 HEAD is now at 3c73ef85 AQL (maintenance, mefpp#1821, !45): Utilise la méthode QString.ascii() plutôt que des static_cast à la "C"... On nettoie le dépôt InterfaceQtVTK: On demande ce range : 3c73ef85983ae15311648d63490ff228d1bad917..3c73ef85983ae15311648d63490ff228d1bad917 ----------------------------- ----------------------------- Traitements pour le dépot webMEF On va 'fetcher' le dépôt webMEF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. error: could not lock config file .git/modules/webmef/src/static/paraview-glance/config: No such file or directory warning: Could not unset core.worktree setting in submodule 'webmef/src/static/paraview-glance' Cleared directory 'webmef/src/static/paraview-glance' On valide le dépôt webMEF avec la référence: 06e3445d7f528d58ea800993af73e28a8529cece HEAD is now at 06e3445 BUG (maintenance, !9): revert du commit 8ae36d90cb1762d7954bb8578107d047e184d34d... On nettoie le dépôt webMEF: On demande ce range : 06e3445d7f528d58ea800993af73e28a8529cece..06e3445d7f528d58ea800993af73e28a8529cece ----------------------------- ----------------------------- Traitements pour le dépot BIB On va 'fetcher' le dépôt BIB avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt BIB avec la référence: 3595b4f36f56d09913b54863f85fa5a4fb48c94a HEAD is now at 3595b4f36 FCT (3DIndusV2, MFPM#3589, !849): flèche plus précise via thème OPT On nettoie le dépôt BIB: On demande ce range : 3595b4f36f56d09913b54863f85fa5a4fb48c94a..3595b4f36f56d09913b54863f85fa5a4fb48c94a ----------------------------- ----------------------------- Traitements pour le dépot BIBTestValidation On va 'fetcher' le dépôt BIBTestValidation avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt BIBTestValidation avec la référence: 93242799b8757d85c7cab56f299609e68fadc1a9 HEAD is now at 93242799b8 AQL (IC, GIREF/mefpp#1821): Epsilons pour OpenBLAS. On nettoie le dépôt BIBTestValidation: On demande ce range : 93242799b8757d85c7cab56f299609e68fadc1a9..93242799b8757d85c7cab56f299609e68fadc1a9 ----------------------------- Remarque : $prefix_script été vide, je le met à $prefix_compilation /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug ** Auto-vérification des scripts de lancement **, relance: 0 Le fichier des mails est /tmp/TV_2024.05.11.22h01m10s.IXH/courriels_personnes_toujours_averties_pour_les_changements_dans_les_compilations.txt Fonction envoieCourrielEtTermine appellée avec 0 Création du virtualenv python /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python Collecting virtualenv Downloading virtualenv-20.26.1-py3-none-any.whl.metadata (4.4 kB) Collecting distlib<1,>=0.3.7 (from virtualenv) Downloading distlib-0.3.8-py2.py3-none-any.whl.metadata (5.1 kB) Collecting filelock<4,>=3.12.2 (from virtualenv) Downloading filelock-3.14.0-py3-none-any.whl.metadata (2.8 kB) Collecting platformdirs<5,>=3.9.1 (from virtualenv) Downloading platformdirs-4.2.1-py3-none-any.whl.metadata (11 kB) Downloading virtualenv-20.26.1-py3-none-any.whl (3.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.9/3.9 MB 24.4 MB/s eta 0:00:00 Downloading distlib-0.3.8-py2.py3-none-any.whl (468 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 468.9/468.9 kB 56.7 MB/s eta 0:00:00 Downloading filelock-3.14.0-py3-none-any.whl (12 kB) Downloading platformdirs-4.2.1-py3-none-any.whl (17 kB) Installing collected packages: distlib, platformdirs, filelock, virtualenv Successfully installed distlib-0.3.8 filelock-3.14.0 platformdirs-4.2.1 virtualenv-20.26.1 created virtual environment CPython3.10.11.final.0-64 in 1628ms creator CPython3Posix(dest=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/users/cmpbib/.local/share/virtualenv) added seed packages: pip==24.0, setuptools==69.5.1, wheel==0.43.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Requirement already satisfied: pip in ./virtual_env_python/lib/python3.10/site-packages (24.0) Collecting bokeh (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached bokeh-3.4.1-py3-none-any.whl.metadata (12 kB) Collecting CT3 (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 2)) Using cached CT3-3.3.3.post1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (3.4 kB) Collecting cheetah3 (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 3)) Using cached Cheetah3-3.2.6.post1-cp310-cp310-linux_x86_64.whl Collecting numpy (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 4)) Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting pandas (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Collecting psutil (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 6)) Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) Collecting python-dateutil (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 7)) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting scipy (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 8)) Using cached scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Collecting six (from -r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 9)) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting Jinja2>=2.9 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting contourpy>=1.2 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting packaging>=16.8 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) Collecting pillow>=7.1.0 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached pillow-10.3.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.2 kB) Collecting PyYAML>=3.10 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting tornado>=6.2 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting xyzservices>=2021.09.1 (from bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached xyzservices-2024.4.0-py3-none-any.whl.metadata (4.0 kB) Collecting pytz>=2020.1 (from pandas->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh->-r /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached bokeh-3.4.1-py3-none-any.whl (7.0 MB) Using cached CT3-3.3.3.post1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.whl (673 kB) Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) Using cached pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.6 MB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (305 kB) Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) Using cached packaging-24.0-py3-none-any.whl (53 kB) Using cached pillow-10.3.0-cp310-cp310-manylinux_2_28_x86_64.whl (4.5 MB) Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) Using cached PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (705 kB) Using cached tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (435 kB) Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) Using cached xyzservices-2024.4.0-py3-none-any.whl (81 kB) Using cached MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Installing collected packages: pytz, xyzservices, tzdata, tornado, six, PyYAML, psutil, pillow, packaging, numpy, MarkupSafe, CT3, cheetah3, scipy, python-dateutil, Jinja2, contourpy, pandas, bokeh Successfully installed CT3-3.3.3.post1 Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 bokeh-3.4.1 cheetah3-3.2.6.post1 contourpy-1.2.1 numpy-1.26.4 packaging-24.0 pandas-2.2.2 pillow-10.3.0 psutil-5.9.8 python-dateutil-2.9.0.post0 pytz-2024.1 scipy-1.13.0 six-1.16.0 tornado-6.4 tzdata-2024.1 xyzservices-2024.4.0 Fin création du virtualenv Execution du hook de configuration /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/GIREF/scripts/Petsc/compile-petsc-master.sh debug ============================================================================================= Mode: mode = debug Variables d'environnement utilisées: vpetsc = petsc-main prefix = WGET = git petsc_GIT = petsc_SHA = MPIdir = /opt/openmpi-4.0.7 LibLAPACK = MKL MKLROOT = /opt/intel/oneapi/mkl/2024.0 LibLAPACK_DIR = AvecIndices64bit = 0 WITH_XXX_COMPILERS = OPTFLAGS = copie_configure_log = /users/cmpgiref/public_html/petsc-main-debug ============================================================================================= Assurez-vous d'avoir installé la MKL avec l'option 'cluster'. On a détecté que la librairie MPI est: 'OPENMPI'. OPTIONS_COPTFLAGS= git clone --depth 100 https://gitlab.com/petsc/petsc.git -b main petsc-main-debug Cloning into 'petsc-main-debug'... SHA GIT courant: commit 2cac467e9d6cbb8f79fe7bcfeb2b1f07091fa1af Merge: e0cc6928 e323ae0a Author: Satish Balay Date: Thu May 9 18:51:38 2024 +0000 Merge branch 'jolivet/housekeeping-gamg' into 'main' Minor PCGAMG housekeeping See merge request petsc/petsc!7533 ============================================================================================= Voici la commande de configuration: ./configure --prefix=/opt/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-4.0.7 --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.0/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.0/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack-lib=-L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 ============================================================================================= ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-party.git for PARTY ============================================================================================= ============================================================================================= Compiling party; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/hdf5-1.14.3-p1.tar.bz2 for HDF5 ============================================================================================= ============================================================================================= Running configure on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2.tar.gz for CMAKE ============================================================================================= ============================================================================================= Running configure on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-metis.git for METIS ============================================================================================= ============================================================================================= Configuring METIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS ============================================================================================= ============================================================================================= Configuring PARMETIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH ============================================================================================= ============================================================================================= Compiling PTScotch; this may take several minutes ============================================================================================= ============================================================================================= Installing PTScotch; this may take several minutes ============================================================================================= ============================================================================================= BLASLAPACK: Looking for multi-threaded MKL for C/Pardiso ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/spai-3.0-p1.tar.gz for SPAI ============================================================================================= ============================================================================================= Configuring, compiling and installing Spai; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use ml at https://trilinos.github.io ************************************************************************************************** ============================================================================================= Trying to download https://gitlab.com/petsc/pkg-trilinos-ml for ML ============================================================================================= ============================================================================================= Configuring ML with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing ML; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu_dist for SUPERLU_DIST ============================================================================================= ============================================================================================= Configuring SUPERLU_DIST with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU_DIST; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu for SUPERLU ============================================================================================= ============================================================================================= Configuring SUPERLU with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/pghysels/STRUMPACK for STRUMPACK ============================================================================================= ============================================================================================= Configuring STRUMPACK with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing STRUMPACK; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use MUMPS at https://mumps-solver.org/index.php?page=dwnld#form ************************************************************************************************** ============================================================================================= Trying to download https://mumps-solver.org/MUMPS_5.7.1.tar.gz for MUMPS ============================================================================================= ============================================================================================= Compiling MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Installing MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/DrTimothyAldenDavis/SuiteSparse for SUITESPARSE ============================================================================================= ============================================================================================= Configuring SUITESPARSE with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUITESPARSE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/hypre-space/hypre for HYPRE ============================================================================================= ============================================================================================= Running configure on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.com/slepc/slepc.git for SLEPC ============================================================================================= ============================================================================================= SLEPc examples are available at arch-linux-c-debug/externalpackages/git.slepc export SLEPC_DIR=/opt/petsc-main-debug ============================================================================================= ============================================================================================= Trying to download https://github.com/hpddm/hpddm for HPDDM ============================================================================================= ============================================================================================= Copying HPDDM; this may take several seconds ============================================================================================= Compilers: C Compiler: /opt/openmpi-4.0.7/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Version: gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) C++ Compiler: /opt/openmpi-4.0.7/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC Version: g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Fortran Compiler: /opt/openmpi-4.0.7/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 Version: GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Linkers: Shared linker: /opt/openmpi-4.0.7/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Dynamic linker: /opt/openmpi-4.0.7/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Libraries linked against: -lrt -lquadmath BlasLapack: Intel MKL Version: 20240000 Libraries: -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads uses 4 byte integers MPI: Version: 3 Includes: -I/opt/openmpi-4.0.7/include mpiexec: /opt/openmpi-4.0.7/bin/mpiexec Implementation: openmpi OMPI_VERSION: 4.0.7 X: Libraries: -lX11 python: Executable: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python/bin/python3 pthread: cmake: Version: 3.29.2 Executable: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/bin/cmake hdf5: Version: 1.14.3 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lhdf5_hl -lhdf5 hypre: Version: 2.31.0 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lHYPRE metis: Version: 5.1.0 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lmetis slepc: Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lslepc SuiteSparse: Version: 7.7.0 Includes: -I/opt/petsc-main-debug/include/suitesparse -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lspqr -lumfpack -lklu -lcholmod -lamd parmetis: Version: 4.0.3 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lparmetis PTScotch: Version: 7.0.3 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr regex: bison: Version: 3.8 Executable: /bin/bison MUMPS: Version: 5.7.1 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -ldmumps -lmumps_common -lpord -lpthread scalapack: Libraries: -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 PARTY: Version: 1.99 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lparty SuperLU: Version: 6.0.1 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lsuperlu SuperLU_DIST: Version: 8.2.1 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lsuperlu_dist mkl_pardiso: Includes: -I/opt/intel/oneapi/mkl/2024.0/include uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads ml: Version: 13.2.0 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lml hpddm: Version: 2.3.0 Includes: -I/opt/petsc-main-debug/include mkl_cpardiso: Includes: -I/opt/intel/oneapi/mkl/2024.0/include mkl_sparse: uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads mkl_sparse_optimize: uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads spai: Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lspai strumpack: Version: 7.2.0 Includes: -I/opt/petsc-main-debug/include Libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -lstrumpack PETSc: Language used to compile PETSc: C PETSC_ARCH: arch-linux-c-debug PETSC_DIR: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug Prefix: /opt/petsc-main-debug Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 64 bytes Using GNU make: /bin/gmake xxx=======================================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=arch-linux-c-debug all xxx=======================================================================================xxx /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-debug ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. https://petsc.org/release/community/mailing/ ========================================== Starting make run on compile at Sat, 11 May 2024 22:14:22 -0400 Machine characteristics: Linux compile 6.2.15-100.fc36.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 11 16:51:53 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug Using PETSc arch: arch-linux-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 21 PETSC_VERSION_SUBMINOR 1 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using configure Options: --prefix=/opt/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-4.0.7 --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.0/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.0/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack-lib="-L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64" Using configuration flags: #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/opt/petsc-main-debug" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CMAKE 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_CXX_DIALECT_CXX20 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MKL_CPARDISO 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_PARDISO 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_ML 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_NO_FINITE_MATH_ONLY 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 7 #define PETSC_HAVE_PACKAGES ":amd:blaslapack:cholmod:cmake:hdf5:hpddm:hypre:klu:mathlib:metis:mkl_cpardiso:mkl_pardiso:mkl_sparse:mkl_sparse_optimize:ml:mpi:mumps:parmetis:party:pthread:ptscotch:regex:scalapack:spai:spqr:strumpack:superlu:superlu_dist:umfpack:x11:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARTY 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SPAI 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_STRUMPACK 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SUPERLU_DIST 1 #define PETSC_HAVE_SUPERLU_DIST_SINGLE 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/opt/petsc-main-debug/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 64 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/bin/gmake --no-print-directory" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2024-05-09 18:51:38 +0000" #define PETSC_VERSION_GIT "v3.21.1-141-g2cac467e" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C compile: /opt/openmpi-4.0.7/bin/mpicc -o .o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 mpicc -show: gcc -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Using C++ compile: /opt/openmpi-4.0.7/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include mpicxx -show: g++ -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Using Fortran compile: /opt/openmpi-4.0.7/bin/mpif90 -o .o -c -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include mpif90 -show: gfortran -I/opt/openmpi-4.0.7/include -pthread -I/opt/openmpi-4.0.7/lib -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Fortran compiler version: GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) ----------------------------------------- Using C/C++ linker: /opt/openmpi-4.0.7/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Using Fortran linker: /opt/openmpi-4.0.7/bin/mpif90 Using Fortran flags: -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using system modules: Using mpi.h: # 1 "/opt/openmpi-4.0.7/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -Wl,-rpath,/opt/openmpi-4.0.7/lib -L/opt/openmpi-4.0.7/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib -L/opt/intel/oneapi/mkl/2024.0/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug -L/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lrt -lquadmath ------------------------------------------ Using mpiexec: /opt/openmpi-4.0.7/bin/mpiexec --oversubscribe ------------------------------------------ Using MAKE: /bin/gmake Default MAKEFLAGS: MAKE_NP:12 MAKE_LOAD:36.0 MAKEFLAGS: -j24 --jobserver-auth=4,5 --no-print-directory -- PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=arch-linux-c-debug ========================================== /bin/gmake --print-directory -f gmakefile -l36.0 --output-sync=recurse V= libs CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/symtranspose.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xioerr.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/drawopenx.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dclear.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xtone.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xtext.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xcolor.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/null/drawnull.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dcoor.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xinit.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/tikz/tikz.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/ximage.o CC arch-linux-c-debug/obj/src/sys/classes/bm/interfaces/bm.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dellipse.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dflush.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dmouse.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dmarker.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/image/drawimage.o CC 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CC arch-linux-c-debug/obj/src/sys/classes/random/impls/rand/rand.o CC arch-linux-c-debug/obj/src/sys/classes/draw/utils/bars.o CC arch-linux-c-debug/obj/src/sys/classes/random/impls/rander48/rander48.o CC arch-linux-c-debug/obj/src/sys/classes/random/interface/dlregisrand.o CC arch-linux-c-debug/obj/src/sys/classes/random/impls/rand48/rand48.o CC arch-linux-c-debug/obj/src/sys/classes/random/interface/random.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dviewp.o CC arch-linux-c-debug/obj/src/sys/classes/random/interface/randreg.o CC arch-linux-c-debug/obj/src/sys/classes/draw/utils/dscatter.o CC arch-linux-c-debug/obj/src/sys/classes/draw/utils/zoom.o CXX arch-linux-c-debug/obj/src/sys/objects/device/impls/host/hostcontext.o CC arch-linux-c-debug/obj/src/sys/classes/random/interface/randomc.o CC arch-linux-c-debug/obj/src/sys/classes/draw/utils/axisc.o CC arch-linux-c-debug/obj/src/sys/classes/draw/utils/hists.o CXX 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arch-linux-c-debug/obj/src/vec/is/ao/interface/ao.o CXX arch-linux-c-debug/obj/src/sys/objects/device/interface/dcontext.o CC arch-linux-c-debug/obj/src/sys/utils/str.o CC arch-linux-c-debug/obj/src/sys/utils/mpits.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/isblock.o CC arch-linux-c-debug/obj/src/vec/is/is/impls/stride/stride.o CC arch-linux-c-debug/obj/src/sys/utils/sorti.o CC arch-linux-c-debug/obj/src/sys/utils/sortso.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/iscomp.o CC arch-linux-c-debug/obj/src/vec/is/is/impls/block/block.o CC arch-linux-c-debug/obj/src/vec/is/ao/impls/memscalable/aomemscalable.o CC arch-linux-c-debug/obj/src/sys/objects/pinit.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/gather/sfgather.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/gatherv/sfgatherv.o CC arch-linux-c-debug/obj/src/sys/objects/options.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/allgather/sfallgather.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/alltoall/sfalltoall.o CXX arch-linux-c-debug/obj/src/sys/objects/device/interface/mark_dcontext.o CC arch-linux-c-debug/obj/src/vec/is/is/impls/general/general.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/neighbor/sfneighbor.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/dlregissf.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/sfmpi.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/sfregi.o CC arch-linux-c-debug/obj/src/vec/is/section/interface/sectionhdf5.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/iscoloring.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/sftype.o CC arch-linux-c-debug/obj/src/vec/is/utils/isio.o CC arch-linux-c-debug/obj/src/vec/is/sf/utils/sfcoord.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/isdiff.o CC arch-linux-c-debug/obj/src/vec/pf/interface/pfall.o CC arch-linux-c-debug/obj/src/vec/pf/impls/string/cstring.o CC arch-linux-c-debug/obj/src/vec/is/utils/hdf5/hdf5io.o CC arch-linux-c-debug/obj/src/vec/pf/impls/constant/const.o CC arch-linux-c-debug/obj/src/vec/is/utils/pmap.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/sfbasic.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/vmpicr.o CC arch-linux-c-debug/obj/src/vec/pf/interface/pf.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/commonmpvec.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/vseqcr.o CC arch-linux-c-debug/obj/src/vec/vec/impls/hypre/vhyp.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/bvec3.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/bvec1.o CC arch-linux-c-debug/obj/src/vec/is/utils/psort.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/pvec2.o CC arch-linux-c-debug/obj/src/vec/vec/impls/shared/shvec.o CC arch-linux-c-debug/obj/src/vec/vec/interface/vecregall.o CC arch-linux-c-debug/obj/src/vec/vec/interface/veccreate.o CC 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arch-linux-c-debug/obj/src/mat/graphops/color/utils/bipartite.o CC arch-linux-c-debug/obj/src/mat/graphops/coarsen/impls/misk/misk.o CC arch-linux-c-debug/obj/src/mat/graphops/order/degree.o CC arch-linux-c-debug/obj/src/mat/graphops/order/fn1wd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/amd/amd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/fnroot.o CC arch-linux-c-debug/obj/src/mat/graphops/order/fndsep.o CC arch-linux-c-debug/obj/src/mat/graphops/color/impls/greedy/greedy.o CC arch-linux-c-debug/obj/src/mat/graphops/color/impls/jp/jp.o CC arch-linux-c-debug/obj/src/mat/graphops/order/gen1wd.o CC arch-linux-c-debug/obj/src/mat/graphops/color/utils/valid.o CC arch-linux-c-debug/obj/src/mat/graphops/color/interface/matcoloring.o CC arch-linux-c-debug/obj/src/mat/graphops/order/gennd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/genrcm.o CC arch-linux-c-debug/obj/src/mat/graphops/order/genqmd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/qmdqt.o CC arch-linux-c-debug/obj/src/mat/graphops/order/qmdmrg.o CC arch-linux-c-debug/obj/src/mat/graphops/order/qmdrch.o CC arch-linux-c-debug/obj/src/mat/graphops/order/qmdupd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/metisnd/metisnd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/rcm.o CC arch-linux-c-debug/obj/src/mat/graphops/order/rootls.o CC arch-linux-c-debug/obj/src/mat/graphops/order/spqmd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/sp1wd.o CC arch-linux-c-debug/obj/src/mat/graphops/order/sprcm.o CC arch-linux-c-debug/obj/src/mat/graphops/order/spnd.o CC arch-linux-c-debug/obj/src/vec/vec/interface/vector.o CC arch-linux-c-debug/obj/src/mat/graphops/color/utils/weights.o CC arch-linux-c-debug/obj/src/mat/graphops/order/wbm.o CC arch-linux-c-debug/obj/src/mat/graphops/order/spectral.o CC arch-linux-c-debug/obj/src/mat/graphops/order/sregis.o CC arch-linux-c-debug/obj/src/mat/graphops/partition/spartition.o CC 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CC arch-linux-c-debug/obj/src/ksp/ksp/interface/eige.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/iguess.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/itregis.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/xmon.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/itres.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/kspmatregi.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/dmksp.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/brdn/badbrdn.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/brdn/brdn.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/bfgs/bfgs.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/dfp/dfp.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/itcl.o CC arch-linux-c-debug/obj/src/ksp/ksp/interface/itcreate.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/dense/cd_utils.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.o CC arch-linux-c-debug/obj/src/ksp/ksp/utils/lmvm/sr1/sr1.o CC 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arch-linux-c-debug/obj/src/ksp/pc/impls/spai/dspai.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gamg/agg.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/bddc/bddc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gasm/gasm.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/redistribute/redistribute.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/bitmask.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/sor/sor.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/svd/svd.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/redundant/redundant.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gamg/gamg.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/spai/ispai.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/shell/shellpc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mpi/pcmpi.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/ivec.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/vpbjacobi/vpbjacobi.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/comm.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/pcregis.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/xxt.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope_coarsedm.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/tfs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/xyt.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/pcset.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/gs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/ml/ml.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mg/mg.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fasgalerkin.o CC arch-linux-c-debug/obj/src/snes/impls/gs/gssecant.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/fieldsplit/fieldsplit.o CC arch-linux-c-debug/obj/src/snes/impls/nasm/aspin.o CC arch-linux-c-debug/obj/src/snes/impls/ksponly/ksponly.o CC arch-linux-c-debug/obj/src/snes/impls/gs/snesgs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope_dmda.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/wb/wb.o CC arch-linux-c-debug/obj/src/snes/impls/ncg/snesncg.o CC arch-linux-c-debug/obj/src/snes/impls/ls/ls.o CC arch-linux-c-debug/obj/src/snes/impls/python/pythonsnes.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/anderson.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/ngmresfunc.o CC arch-linux-c-debug/obj/src/snes/impls/composite/snescomposite.o CC arch-linux-c-debug/obj/src/snes/impls/ms/ms.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fas.o CC arch-linux-c-debug/obj/src/snes/impls/multiblock/multiblock.o CC arch-linux-c-debug/obj/src/snes/impls/shell/snesshell.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fasfunc.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesdnest.o CC arch-linux-c-debug/obj/src/snes/impls/richardson/snesrichardson.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/snesngmres.o CC arch-linux-c-debug/obj/src/snes/interface/dlregissnes.o CC arch-linux-c-debug/obj/src/snes/impls/patch/snespatch.o CC arch-linux-c-debug/obj/src/snes/impls/nasm/nasm.o CC arch-linux-c-debug/obj/src/snes/impls/qn/qn.o CC arch-linux-c-debug/obj/src/snes/impls/ntrdc/ntrdc.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesmfj2.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesnoise.o CC arch-linux-c-debug/obj/src/snes/impls/vi/ss/viss.o CC arch-linux-c-debug/obj/src/snes/interface/snesj2.o CC arch-linux-c-debug/obj/src/snes/interface/snesregi.o CC arch-linux-c-debug/obj/src/snes/interface/snesj.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/precon.o CC arch-linux-c-debug/obj/src/snes/interface/snesob.o CC arch-linux-c-debug/obj/src/snes/interface/snespc.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/basic/linesearchbasic.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/cp/linesearchcp.o CC arch-linux-c-debug/obj/src/snes/impls/vi/vi.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/shell/linesearchshell.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/l2/linesearchl2.o CC arch-linux-c-debug/obj/src/snes/linesearch/interface/linesearchregi.o CC arch-linux-c-debug/obj/src/snes/impls/tr/tr.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/bt/linesearchbt.o CC arch-linux-c-debug/obj/src/snes/impls/vi/rs/virs.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.o CC arch-linux-c-debug/obj/src/snes/mf/snesmfj.o CC arch-linux-c-debug/obj/src/snes/interface/snesut.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/basic/adaptbasic.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/cfl/adaptcfl.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/glee/adaptglee.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/patch/pcpatch.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/none/adaptnone.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/mocregis.o CC arch-linux-c-debug/obj/src/snes/utils/convest.o CC arch-linux-c-debug/obj/src/ts/characteristic/impls/da/slda.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/slregis.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/dsp/adaptdsp.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/history/adapthist.o CC arch-linux-c-debug/obj/src/snes/utils/dmlocalsnes.o CC arch-linux-c-debug/obj/src/snes/utils/dmdasnes.o CC arch-linux-c-debug/obj/src/snes/utils/dmsnes.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/euler/euler.o CC arch-linux-c-debug/obj/src/snes/utils/dm/dmadapt.o CC arch-linux-c-debug/obj/src/snes/linesearch/interface/linesearch.o CC arch-linux-c-debug/obj/src/snes/utils/dm/dminterpolatesnes.o CC arch-linux-c-debug/obj/src/ts/impls/eimex/eimex.o CC arch-linux-c-debug/obj/src/snes/utils/dmplexsnes.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/hypre/hypre.o CC arch-linux-c-debug/obj/src/ts/event/tsevent.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/characteristic.o CC arch-linux-c-debug/obj/src/ts/impls/bdf/bdf.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/rk/mrk.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/ssp/ssp.o CC arch-linux-c-debug/obj/src/ts/adapt/interface/tsadapt.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/glle/glleadapt.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/alpha/alpha1.o CC arch-linux-c-debug/obj/src/ts/impls/python/pythonts.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/alpha/alpha2.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/discgrad/tsdiscgrad.o CC arch-linux-c-debug/obj/src/ts/interface/dlregists.o CC arch-linux-c-debug/obj/src/ts/impls/glee/glee.o CC arch-linux-c-debug/obj/src/ts/impls/mimex/mimex.o CC arch-linux-c-debug/obj/src/ts/interface/tscreate.o CC arch-linux-c-debug/obj/src/ts/impls/pseudo/posindep.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/rk/rk.o CC arch-linux-c-debug/obj/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.o CC arch-linux-c-debug/obj/src/ts/interface/tseig.o CC arch-linux-c-debug/obj/src/ts/impls/arkimex/arkimex.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/irk/irk.o CC arch-linux-c-debug/obj/src/ts/interface/tsregall.o CC arch-linux-c-debug/obj/src/ts/interface/tsreg.o CC arch-linux-c-debug/obj/src/ts/interface/tshistory.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/singlefile/singlefile.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/basic/trajbasic.o CC arch-linux-c-debug/obj/src/ts/interface/tsrhssplit.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/glle/glle.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/visualization/trajvisualization.o CC arch-linux-c-debug/obj/src/ts/trajectory/utils/reconstruct.o CC arch-linux-c-debug/obj/src/ts/impls/multirate/mprk.o CC arch-linux-c-debug/obj/src/ts/impls/rosw/rosw.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/theta/theta.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bnls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/blmvm/blmvm.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bntr.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bntl.o CC arch-linux-c-debug/obj/src/ts/utils/tsconvest.o CC arch-linux-c-debug/obj/src/ts/utils/dmnetworkts.o CC arch-linux-c-debug/obj/src/ts/interface/sensitivity/tssen.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnkls.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/memory/trajmemory.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnk.o CC arch-linux-c-debug/obj/src/ts/utils/dmdats.o CC arch-linux-c-debug/obj/src/ts/interface/tsmon.o CC arch-linux-c-debug/obj/src/ts/utils/dmlocalts.o CXX arch-linux-c-debug/obj/src/ksp/ksp/impls/hpddm/hpddm.o CC arch-linux-c-debug/obj/src/ts/utils/dmplexts.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnktl.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnktr.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnls/bqnls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bncg/bncg.o CC arch-linux-c-debug/obj/src/ts/trajectory/interface/traj.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssls.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssils.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssfls.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/asls/asfls.o CC arch-linux-c-debug/obj/src/ts/utils/dmts.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bnk.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/asls/asils.o CC arch-linux-c-debug/obj/src/tao/bound/impls/tron/tron.o CC arch-linux-c-debug/obj/src/tao/interface/dlregistao.o CXX arch-linux-c-debug/obj/src/ksp/pc/impls/hpddm/pchpddm.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/almm/almmutils.o CC arch-linux-c-debug/obj/src/tao/interface/fdiff.o CC arch-linux-c-debug/obj/src/tao/interface/taosolverregi.o CC arch-linux-c-debug/obj/src/tao/bound/utils/isutil.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/unit/unit.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/almm/almm.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_bounds.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/armijo/armijo.o CC arch-linux-c-debug/obj/src/tao/linesearch/interface/dlregis_taolinesearch.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/morethuente/morethuente.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/owarmijo/owarmijo.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/brgn/brgn.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_fg.o CC arch-linux-c-debug/obj/src/tao/python/pythontao.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/ipm/ipm.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/admm/admm.o CC arch-linux-c-debug/obj/src/tao/shell/taoshell.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_hj.o CC arch-linux-c-debug/obj/src/tao/snes/taosnes.o CC arch-linux-c-debug/obj/src/tao/matrix/submatfree.o CC arch-linux-c-debug/obj/src/snes/interface/snes.o CC arch-linux-c-debug/obj/src/tao/quadratic/impls/gpcg/gpcg.o CC arch-linux-c-debug/obj/src/tao/matrix/adamat.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/lmvm/lmvm.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/cg/taocg.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/ipm/pdipm.o CC arch-linux-c-debug/obj/src/ts/utils/dmplexlandau/plexland.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/neldermead/neldermead.o CC arch-linux-c-debug/obj/src/tao/quadratic/impls/bqpip/bqpip.o CC arch-linux-c-debug/obj/src/tao/pde_constrained/impls/lcl/lcl.o CC arch-linux-c-debug/obj/src/tao/linesearch/interface/taolinesearch.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/bmrm/bmrm.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/owlqn/owlqn.o CC arch-linux-c-debug/obj/src/tao/util/tao_util.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/ntl/ntl.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/ntr/ntr.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/nls/nls.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/pounders/pounders.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/bddc/bddcprivate.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver.o CC arch-linux-c-debug/obj/src/ts/interface/ts.o CLINKER arch-linux-c-debug/lib/libpetsc.so.3.021.1 ========================================= Now to install the libraries do: make PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=arch-linux-c-debug install ========================================= *** Using PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=arch-linux-c-debug *** *** Installing PETSc at prefix location: /opt/petsc-main-debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make PETSC_DIR=/opt/petsc-main-debug PETSC_ARCH="" check ==================================== /bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_INSTALL=install install-builtafterpetsc /bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug PETSC_INSTALL=install petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install gmake[3]: Nothing to be done for 'petsc4py-install'. gmake[3]: Nothing to be done for 'libmesh-install'. gmake[3]: Nothing to be done for 'mfem-install'. *** Building SLEPc *** Checking environment... done Checking PETSc installation... done Checking LAPACK library... done Checking FEAST... done Checking SCALAPACK... done Writing various configuration files... done ================================================================================ SLEPc Configuration ================================================================================ SLEPc directory: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc It is a git repository on branch: remotes/origin/jose/test-petsc-branch~6 SLEPc prefix directory: /opt/petsc-main_debug PETSc directory: /opt/petsc-main-debug Prefix install with double precision real numbers FEAST from MKL linked by PETSc SCALAPACK from SCALAPACK linked by PETSc xxx==========================================================================xxx Configure stage complete. Now build the SLEPc library with: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/opt/petsc-main-debug xxx==========================================================================xxx ========================================== Starting make run on compile at Sat, 11 May 2024 22:15:19 -0400 Machine characteristics: Linux compile 6.2.15-100.fc36.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 11 16:51:53 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using SLEPc directory: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc Using PETSc directory: /opt/petsc-main-debug Using PETSc arch: installed-arch-linux2-c-debug ----------------------------------------- SLEPC_VERSION_RELEASE 0 SLEPC_VERSION_MAJOR 3 SLEPC_VERSION_MINOR 21 SLEPC_VERSION_SUBMINOR 0 SLEPC_VERSION_DATE "unknown" SLEPC_VERSION_GIT "unknown" SLEPC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using SLEPc configure options: --prefix=/opt/petsc-main-debug Using SLEPc configuration flags: #define SLEPC_PETSC_DIR "/opt/petsc-main-debug" #define SLEPC_PETSC_ARCH "" #define SLEPC_DIR "/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc" #define SLEPC_LIB_DIR "/opt/petsc-main_debug/lib" #define SLEPC_VERSION_GIT "v3.21.0-1-gb9e348296" #define SLEPC_VERSION_DATE_GIT "2024-03-30 11:21:43 +0100" #define SLEPC_VERSION_BRANCH_GIT "remotes/origin/jose/test-petsc-branch~6" #define SLEPC_HAVE_FEAST 1 #define SLEPC_HAVE_SCALAPACK 1 #define SLEPC_SCALAPACK_HAVE_UNDERSCORE 1 #define SLEPC_HAVE_PACKAGES ":feast:scalapack:" ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 21 PETSC_VERSION_SUBMINOR 1 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using PETSc configure options: --prefix=/opt/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-4.0.7 --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.0/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.0/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.0 --with-scalapack-lib="-L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64" Using PETSc configuration flags: #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/opt/petsc-main-debug" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CMAKE 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_CXX_DIALECT_CXX20 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MKL_CPARDISO 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_PARDISO 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_ML 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_NO_FINITE_MATH_ONLY 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 7 #define PETSC_HAVE_PACKAGES ":amd:blaslapack:cholmod:cmake:hdf5:hpddm:hypre:klu:mathlib:metis:mkl_cpardiso:mkl_pardiso:mkl_sparse:mkl_sparse_optimize:ml:mpi:mumps:parmetis:party:pthread:ptscotch:regex:scalapack:spai:spqr:strumpack:superlu:superlu_dist:umfpack:x11:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARTY 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SPAI 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_STRUMPACK 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SUPERLU_DIST 1 #define PETSC_HAVE_SUPERLU_DIST_SINGLE 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/opt/petsc-main-debug/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 64 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/bin/gmake --no-print-directory" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2024-05-09 18:51:38 +0000" #define PETSC_VERSION_GIT "v3.21.1-141-g2cac467e" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C/C++ include paths: -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include Using C compile: /opt/openmpi-4.0.7/bin/mpicc -o .o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 mpicc -show: gcc -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Using C++ compile: /opt/openmpi-4.0.7/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include mpicxx -show: g++ -I/opt/openmpi-4.0.7/include -pthread -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) Using Fortran include/module paths: -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include Using Fortran compile: /opt/openmpi-4.0.7/bin/mpif90 -o .o -c -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/opt/petsc-main-debug/include -I/opt/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.0/include -I/opt/openmpi-4.0.7/include mpif90 -show: gfortran -I/opt/openmpi-4.0.7/include -pthread -I/opt/openmpi-4.0.7/lib -L/opt/openmpi-4.0.7/lib -Wl,-rpath -Wl,/opt/openmpi-4.0.7/lib -Wl,--enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Fortran compiler version: GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) ----------------------------------------- Using C/C++ linker: /opt/openmpi-4.0.7/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Using Fortran linker: /opt/openmpi-4.0.7/bin/mpif90 Using Fortran flags: -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -L/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -lslepc -Wl,-rpath,/opt/petsc-main-debug/lib -L/opt/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.0/lib/intel64/intel64 -Wl,-rpath,/opt/openmpi-4.0.7/lib -L/opt/openmpi-4.0.7/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.0/lib -L/opt/intel/oneapi/mkl/2024.0/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug -L/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lrt -lquadmath ------------------------------------------ Using mpiexec: /opt/openmpi-4.0.7/bin/mpiexec --oversubscribe ------------------------------------------ Using MAKE: /bin/gmake Default MAKEFLAGS: MAKE_NP:12 MAKE_LOAD:36.0 MAKEFLAGS: -j24 --jobserver-auth=4,5 --no-print-directory -- PETSC_DIR=/opt/petsc-main-debug PETSC_ARCH=installed-arch-linux2-c-debug PETSC_INSTALL=install SLEPC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc ========================================== /bin/gmake --print-directory -f gmakefile -l36.0 --output-sync=recurse V= slepc_libs /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/virtual_env_python/bin/python3 /opt/petsc-main-debug/share/petsc/examples/config/gmakegen.py --petsc-arch= --pkg-dir=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc --pkg-name=slepc --pkg-pkgs=sys,eps,svd,pep,nep,mfn,lme --pkg-arch=installed-arch-linux2-c-debug CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/dsutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/hz.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dibtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbiorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghep/dsghep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvkrylov.o Use "/bin/gmake V=1" to see verbose compile lines, "/bin/gmake V=0" to suppress. CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/contiguous/contig.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dlaed3m.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvblas.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/mat/bvmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/vecs/vecs.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dmerg2.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/svec/svec.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/invit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsbtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvfunc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsrtdf.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gnhep/dsgnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gsvd/dsgsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvcontour.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvlapack.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/tensor/bvtensor.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/dsghiep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/combine/fncombine.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/invsqrt/fninvsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvglobal.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhepts/dsnhepts.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/svd/dssvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/phi/fnphi.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhep/dsnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/pep/dspep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/dshep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hsvd/dshsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/fnutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dspriv.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/log/fnlog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/sqrt/fnsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ellipse/rgellipse.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/rational/fnrational.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nep/dsnep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/polygon/rgpolygon.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shift/shift.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/interval/rginterval.o CC installed-arch-linux2-c-debug/obj/src/sys/dlregisslepc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/sinvert/sinvert.o CC installed-arch-linux2-c-debug/obj/src/sys/finit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shell/shell.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/precond/precond.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/cayley/cayley.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stshellmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ring/rgring.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/exp/fnexp.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filtlan.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stset.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filter.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/slepccontour.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/pool.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcsc.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcutil.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcinit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsles.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdtestconv.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdschm.o CC installed-arch-linux2-c-debug/obj/src/sys/mat/matutil.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdgd2.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdinitv.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsolve.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/vecutil.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/davidson.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdutils.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/rqcg/rqcg.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stfunc.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdupdatev.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/scalapack/scalapack.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/arnoldi/arnoldi.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-indef.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdcalcpairs.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/epskrylov.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/lobpcg/lobpcg.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lapack/lapack.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/dlregiseps.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/gd/gd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-twosided.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdimprovex.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/jd/jd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/subspace/subspace.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsregis.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsdefault.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsmon.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/lanczos/lanczos.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/veccomp.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsbasic.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/external/scalapack/svdscalap.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lyapii/lyapii.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/dlregissvd.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/randomized/rsvd.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lapack/svdlapack.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lanczos/gklanczos.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/ciss/ciss.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssetup.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svddefault.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdbasic.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdregis.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cross/cross.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/feast/feast.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsview.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssolve.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdmon.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/power/power.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/pepkrylov.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/krylovschur.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-slice.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsetup.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/dlregispep.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/peputils.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/qeplin.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsolve.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsopts.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cyclic/cyclic.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/qarnoldi/qarnoldi.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdview.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdopts.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepregis.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepdefault.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepmon.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepbasic.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsetup.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/ptoar.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/dlregisnep.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepdefault.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/interpol/interpol.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/narnoldi/narnoldi.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs-fullb.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp-twosided.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/peprefine.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepview.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/stoar.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/linear.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/qslice.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepmon.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/rii/rii.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepopts.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepregis.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/dlregismfn.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnregis.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/krylov/mfnkrylov.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnmon.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/expokit/mfnexpokit.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/trlanczos/trlanczos.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepresolv.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsetup.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nepdefl.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsetup.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/nrefine.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/dlregislme.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnbasic.o CC installed-arch-linux2-c-debug/obj/src/lme/impls/krylov/lmekrylov.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepbasic.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmemon.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeregis.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/neprefine.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnopts.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmebasic.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepview.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/jd/pjd.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesetup.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesolve.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeopts.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsolve.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmedense.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepopts.o CLINKER installed-arch-linux2-c-debug/lib/libslepc.so.3.021.0 Now to install the library do: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/opt/petsc-main-debug install ========================================= *** Installing SLEPc *** gmake[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. *** Installing SLEPc at prefix location: /opt/petsc-main_debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make SLEPC_DIR=/opt/petsc-main_debug PETSC_DIR=/opt/petsc-main-debug PETSC_ARCH="" check ==================================== /bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/opt/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc install-builtafterslepc /bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/opt/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc slepc4py-install gmake[7]: Nothing to be done for 'slepc4py-install'. *** Building and installing HPDDM *** gmake[3]: Nothing to be done for 'amrex-install'. gmake[3]: Nothing to be done for 'bamg-install'.