====================== Début: 2024.06.12 10h23m41s ====================== nettoyage: 1er find: nettoyage: 2e find: ================================= Informations sur l'environnement: ================================= ulimit -a: real-time non-blocking time (microseconds, -R) unlimited core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 256340 max locked memory (kbytes, -l) 8192 max memory size (kbytes, -m) unlimited open files (-n) 524288 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) 8192 cpu time (seconds, -t) unlimited max user processes (-u) 256340 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited hostname -I: 132.203.7.54 192.168.122.1 172.17.0.1 uname -a: Linux asti 6.8.9-100.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 2 18:50:49 UTC 2024 x86_64 GNU/Linux ================================= Les arguments passés à ce script: La variable PATH contient: /opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/cluster/logiciels/bin La variable LD_LIBRARY_PATH contient: /pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: La variable BASH contient: /usr/bin/bash ====================== env donne: APPIMAGE_EXTRACT_AND_RUN=1 autocopie=1 autre_message_dans_bilan=Voici les logs de Petsc:\nSHA du dépôt (si applicable): ${GIT_COMMIT_PETSC}\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_RDict.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_test.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_streams.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_make.log\n\n autres_options_make=--output-sync=line baspage_html=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/Validation/script/baspage_compilation BCS_FILELOG_NAME=stdout BIB_GEOGEC_FORMAT=HDF BIB_RSTDLR_FORMAT=HDF CCACHE_COMMENTS=yes CCACHE_DIR=/pmi/cmpbib/.ccache CCACHE_HARDLINK=1 CCACHE_SLOPPINESS=include_file_mtime cheminConf=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/BIBTestValidation/Scripts/CompilAuto/parametres_giref_avec_bib.json CMAKE_PREFIX_PATH=/opt/intel/oneapi/mkl/2024.1/lib/cmake: compilateur=g++-13.2.1/openmpi-4.1.6/petsc-master copie_configure_log=/users/cmpgiref/public_html/petsc-main-debug 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LIBRARY_PATH=/opt/intel/oneapi/mkl/2024.1/lib/: lien_web=https://cantal.giref.ulaval.ca/cmpbib/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ lRetour=0 machine=asti /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/fedora-devel-39_cc-natif_openmpi-4.1.6-opt_mkl-2024.1_no-petsc_cc-natif_qt-paquet_vtk_giref-singularity_complete.sif machine_sans_no_port=asti MEFPP_DEBUGGER=abort MEFPP_IC_DEBUG= MEFPP_TV_DEBUGGER=abort MKL_CBWR=COMPATIBLE MKL_NUM_THREADS=1 MKLROOT=/opt/intel/oneapi/mkl/2024.1 MPIdir=/opt/mpi/openmpi-4.1.6-opt mpi_v=2 MV2_ENABLE_AFFINITY=0 nb_proc=8 nb_proc_TV=7 NLSPATH=/opt/intel/oneapi/mkl/2024.1/share/locale/%l_%t/%N: nom_compilation=compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ nom_image=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/fedora-devel-39_cc-natif_openmpi-4.1.6-opt_mkl-2024.1_no-petsc_cc-natif_qt-paquet_vtk_giref-singularity_complete.sif OMPI_MCA_hwloc_base_binding_policy=none OMPI_MCA_mpi_yield_when_idle=1 OPENBLAS_NUM_THREADS=1 OS=singularity Fedora 39 PATH=/opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/cluster/logiciels/bin path_web=/users/cmpbib/compilations/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ pDepots_ref=declare -A depots_ref=([Pilote]="1a13d98f9654e23e14377887988bd7e2d7db9d7c" [webMEF]="06e3445d7f528d58ea800993af73e28a8529cece" [GIREF]="462b3ba509bc9eccd1f5a1d27562942a64165588" [Logger]="af2a3f4910ecd7874649bafa9ba4351a8dc2ca4c" [Validation]="e217b0fdb9d22cef7599a2e641ead8e037d773bb" [TestValidation]="6830b87a14b5bc7a2ca3c4d290a451db3d41c392" [InterfaceQtVTK]="a68d9d698f938e76bdf3a52265927e1836193174" [BIB]="58c16b3091aab91c5911f08c3b38f2deb6d22444" [BIBTestValidation]="9fc640cc0ce99dc6d31cce4f3a6071f07f5563e2" ) pDepots_url=declare -A depots_url=([BIB]="bibgit@cantal.giref.ulaval.ca:" [BIBTestValidation]="bibgit@cantal.giref.ulaval.ca:" ) perlPath=/usr/bin PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2024.1/lib/pkgconfig: pref_html=/users/cmpbib/compilations/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ prefix_compilation=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ prefix_exec=/usr/bin prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/petsc-main-debug PWD=/users/cmpbib SCREENDIR=/users/cmpbib/.screen script_calcul_bilan=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/Compyl/calcul_bilan.py script_crontab=TestValidation/Scripts/CompilAuto/MEFPP_IC_docker/compilations_autos/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/script_compilation_linux_singularity.sh script_dir=/users/cmpgiref/gestion_mefpp/bin SHLVL=3 sous_script_TV=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/BIBTestValidation/Scripts/BIB_sous_script_TV.sh Temps_Total_Maximum=28800 type_os=Linux umask=022 userid=cmpbib _=/usr/bin/env var_LD_LIBRARY_PATH=/pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: WGET=git ====================== top donne: top - 10:23:42 up 20:07, 0 user, load average: 0.00, 0.72, 3.76 Tasks: 356 total, 1 running, 355 sleeping, 0 stopped, 0 zombie %Cpu(s): 4.2 us, 4.2 sy, 0.0 ni, 91.7 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st MiB Mem : 64131.5 total, 22471.6 free, 2191.1 used, 40297.3 buff/cache MiB Swap: 12288.0 total, 12288.0 free, 0.0 used. 61940.4 avail Mem PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 443435 cmpbib 20 0 11724 5888 3840 R 5.9 0.0 0:00.01 top 1 root 20 0 170004 15404 9596 S 0.0 0.0 0:06.39 systemd 2 root 20 0 0 0 0 S 0.0 0.0 0:00.05 kthreadd 3 root 20 0 0 0 0 S 0.0 0.0 0:00.00 pool_wo+ 4 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 5 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 6 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 7 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 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1064 root 39 19 4836 3200 2816 S 0.0 0.0 0:00.00 alsactl 1101 994 20 0 85348 4100 3576 S 0.0 0.0 0:00.05 chronyd 1109 root 20 0 535524 9208 6892 S 0.0 0.0 0:00.55 account+ 1115 root 20 0 58100 9216 7808 S 0.0 0.0 0:00.41 systemd+ 1169 root 20 0 305740 6784 6144 S 0.0 0.0 0:00.06 uresour+ 1206 root 20 0 1034308 21704 19144 S 0.0 0.0 0:01.62 Network+ 1241 root 20 0 246928 10496 9088 S 0.0 0.0 0:00.00 cupsd 1242 root 20 0 137856 25344 20480 S 0.0 0.0 0:03.99 gitlab-+ 1253 root 20 0 14124 8576 7424 S 0.0 0.0 0:00.04 sshd 1257 976 25 5 15128 7448 6620 S 0.0 0.0 0:07.17 iceccd 1258 root 20 0 270948 3748 2992 S 0.0 0.0 0:00.01 gssproxy 1267 root 20 0 2243540 43020 30336 S 0.0 0.1 0:06.51 contain+ 1292 root 20 0 3264 1920 1792 S 0.0 0.0 0:00.00 atd 1303 root 20 0 525456 7936 7296 S 0.0 0.0 0:00.01 gdm 1314 40106 20 0 19468 11392 9472 S 0.0 0.0 0:00.52 systemd 1400 root 20 0 471112 10856 9576 S 0.0 0.0 0:00.01 gdm-ses+ 1403 40106 20 0 45596 7480 2048 S 0.0 0.0 0:00.00 (sd-pam) 1484 42 20 0 18672 11520 9472 S 0.0 0.0 0:00.62 systemd 1485 42 20 0 36556 7484 2048 S 0.0 0.0 0:00.00 (sd-pam) 1558 root 20 0 13572 1792 1280 S 0.0 0.0 0:00.00 xinetd 1670 42 20 0 448268 5888 5504 S 0.0 0.0 0:00.00 gdm-x-s+ 1674 42 20 0 2349988 79960 51820 S 0.0 0.1 0:01.25 Xorg 1974 root 20 0 48004 3880 3072 S 0.0 0.0 0:00.08 master 1977 89 20 0 60000 9344 8320 S 0.0 0.0 0:00.01 qmgr 2043 985 20 0 8808 1792 1536 S 0.0 0.0 0:00.00 dnsmasq 2044 root 20 0 8808 1024 768 S 0.0 0.0 0:00.00 dnsmasq 2091 42 20 0 9052 3960 3576 S 0.0 0.0 0:00.00 dbus-br+ 2092 42 20 0 4740 2432 2304 S 0.0 0.0 0:00.01 dbus-br+ 2094 42 20 0 5012 2032 1904 S 0.0 0.0 0:00.00 dbus-ru+ 2095 42 20 0 19592 4736 4352 S 0.0 0.0 0:00.08 dbus-da+ 2096 42 20 0 912540 15744 13568 S 0.0 0.0 0:00.15 gnome-s+ 2116 42 20 0 380776 7424 6784 S 0.0 0.0 0:00.00 at-spi-+ 2122 42 20 0 19168 4608 4352 S 0.0 0.0 0:00.00 dbus-da+ 2144 42 20 0 6076704 173356 104268 S 0.0 0.3 0:12.72 gnome-s+ 2178 42 20 0 1916520 79888 63288 S 0.0 0.1 0:00.13 mutter-+ 2239 42 20 0 521840 5868 5484 S 0.0 0.0 0:00.00 xdg-per+ 2248 root 20 0 522860 6784 6016 S 0.0 0.0 0:00.07 upowerd 2256 42 9 -11 326440 12656 8176 S 0.0 0.0 0:00.04 pipewire 2257 42 9 -11 620600 18744 13752 S 0.0 0.0 0:00.25 wireplu+ 2259 42 9 -11 315716 8960 7168 S 0.0 0.0 0:00.02 pipewir+ 2295 42 20 0 3027456 28552 23168 S 0.0 0.0 0:00.04 gjs 2296 root 20 0 13680 6016 5248 S 0.0 0.0 0:00.03 wpa_sup+ 2317 42 20 0 233500 7552 6912 S 0.0 0.0 0:00.01 at-spi2+ 2320 982 20 0 529568 11744 9824 S 0.0 0.0 0:00.08 colord 2331 42 20 0 753120 10880 9728 S 0.0 0.0 0:00.02 gsd-sha+ 2333 42 20 0 624092 17008 14960 S 0.0 0.0 0:00.05 gsd-wac+ 2336 42 20 0 625964 17792 16000 S 0.0 0.0 0:00.10 gsd-col+ 2337 42 20 0 624052 17024 15104 S 0.0 0.0 0:00.02 gsd-key+ 2338 42 20 0 691604 15056 13392 S 0.0 0.0 0:00.12 gsd-pri+ 2345 42 20 0 602996 13148 6528 S 0.0 0.0 0:00.30 ibus-da+ 2347 42 20 0 743648 6400 6016 S 0.0 0.0 0:00.01 gsd-rfk+ 2349 42 20 0 684648 16436 14644 S 0.0 0.0 0:01.87 gsd-sma+ 2350 42 20 0 614564 11136 9984 S 0.0 0.0 0:00.01 gsd-dat+ 2357 42 20 0 769980 20352 18048 S 0.0 0.0 0:00.09 gsd-med+ 2366 42 20 0 522128 5888 5504 S 0.0 0.0 0:00.00 gsd-scr+ 2370 42 20 0 604540 8832 8064 S 0.0 0.0 0:00.00 gsd-sou+ 2374 42 20 0 596544 6144 5760 S 0.0 0.0 0:00.00 gsd-a11+ 2377 42 20 0 599204 7680 7040 S 0.0 0.0 0:01.54 gsd-hou+ 2381 42 20 0 699404 18432 16512 S 0.0 0.0 0:00.10 gsd-pow+ 2383 42 20 0 229044 5248 4864 S 0.0 0.0 0:00.00 dconf-s+ 2411 42 20 0 636376 17280 15104 S 0.0 0.0 0:00.01 gsd-pri+ 2443 42 20 0 523032 7036 6524 S 0.0 0.0 0:00.00 ibus-dc+ 2446 42 20 0 476872 17388 15596 S 0.0 0.0 0:00.01 ibus-x11 2449 42 20 0 522964 7012 6500 S 0.0 0.0 0:00.00 ibus-po+ 2465 root 20 0 321772 6912 6016 S 0.0 0.0 0:00.98 pcscd 2593 42 20 0 2896376 28124 23168 S 0.0 0.0 0:00.05 gjs 2656 42 20 0 449180 6912 6400 S 0.0 0.0 0:00.00 ibus-en+ 2678 42 20 0 521840 5868 5484 S 0.0 0.0 0:00.00 xdg-per+ 2709 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 2726 rpcuser 20 0 9484 3092 2408 S 0.0 0.0 0:00.01 rpc.sta+ 2761 root 20 0 224656 3704 2936 S 0.0 0.0 0:00.02 crond 2990 42 20 0 2794656 157488 58540 S 0.0 0.2 0:00.90 python3 3032 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3039 root 20 0 0 0 0 I 0.0 0.0 0:00.00 NFSv4 c+ 7968 89 20 0 60888 11620 10340 S 0.0 0.0 0:00.00 tlsmgr 10185 root 20 0 0 0 0 I 0.0 0.0 0:01.90 kworker+ 32635 root 20 0 36756 11236 9444 S 0.0 0.0 0:00.00 sshd 32643 20087 20 0 18424 11632 9584 S 0.0 0.0 0:00.28 systemd 32648 20087 20 0 193060 7536 2048 S 0.0 0.0 0:00.00 (sd-pam) 32672 20087 20 0 37208 7256 5120 S 0.0 0.0 0:00.55 sshd 32689 20087 20 0 235520 7424 3968 S 0.0 0.0 0:00.14 bash 33532 root 20 0 36756 11248 9456 S 0.0 0.0 0:00.01 sshd 33537 20087 20 0 37076 7132 5248 S 0.0 0.0 0:00.19 sshd 33553 20087 20 0 235488 7040 3712 S 0.0 0.0 0:00.12 bash 86575 root 20 0 0 0 0 I 0.0 0.0 0:00.44 kworker+ 135230 root 20 0 0 0 0 I 0.0 0.0 0:02.13 kworker+ 154584 root 20 0 0 0 0 I 0.0 0.0 0:00.20 kworker+ 277331 root 20 0 0 0 0 I 0.0 0.0 0:00.23 kworker+ 330031 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330032 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330034 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330035 root 20 0 0 0 0 S 0.0 0.0 0:00.41 dmcrypt+ 330180 root 20 0 0 0 0 I 0.0 0.0 0:01.36 kworker+ 330210 root 20 0 0 0 0 S 0.0 0.0 0:00.17 jbd2/dm+ 330211 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330919 root 20 0 241336 10236 8572 S 0.0 0.0 0:00.02 sssd 330921 root 20 0 244444 15472 12784 S 0.0 0.0 0:00.13 sssd_be 330922 root 20 0 275352 46584 44408 S 0.0 0.1 0:00.57 sssd_nss 330923 root 20 0 243504 12800 11264 S 0.0 0.0 0:00.23 sssd_pam 330924 root 20 0 240416 9300 8148 S 0.0 0.0 0:00.00 sssd_au+ 330925 root 20 0 651200 10192 8272 S 0.0 0.0 0:00.03 automou+ 330946 root 20 0 2217436 82356 54656 S 0.0 0.1 0:00.32 dockerd 330977 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 347035 cmpbib 20 0 18488 11512 9592 S 0.0 0.0 0:00.20 systemd 347039 cmpbib 20 0 194092 8592 2048 S 0.0 0.0 0:00.00 (sd-pam) 363694 root 20 0 0 0 0 I 0.0 0.0 0:00.13 kworker+ 363697 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 364226 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 364244 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 364258 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 364276 cmpbib 20 0 233448 2448 1664 S 0.0 0.0 0:00.00 screen 364277 cmpbib 20 0 232828 4480 3712 S 0.0 0.0 0:00.00 bash 365040 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 365131 root 20 0 0 0 0 I 0.0 0.0 0:01.41 kworker+ 365132 root 20 0 0 0 0 I 0.0 0.0 0:00.15 kworker+ 365141 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 365143 root 20 0 0 0 0 I 0.0 0.0 0:00.05 kworker+ 365417 root 20 0 0 0 0 I 0.0 0.0 0:00.12 kworker+ 402373 root 20 0 0 0 0 I 0.0 0.0 0:00.18 kworker+ 418942 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 420938 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 421363 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 421412 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 421794 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 438297 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 439565 root 20 0 0 0 0 I 0.0 0.0 0:00.24 kworker+ 439566 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 442074 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 442075 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 442149 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 442151 root 20 0 0 0 0 I 0.0 0.0 0:00.12 kworker+ 442154 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 442619 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 442630 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 442635 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 442637 89 20 0 59804 9200 8176 S 0.0 0.0 0:00.00 pickup 442640 root 20 0 36760 11136 9344 S 0.0 0.0 0:00.00 sshd 442645 20087 20 0 37516 8628 6656 S 0.0 0.0 0:00.00 sshd 442663 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 442666 root 20 0 239384 9180 8028 S 0.0 0.0 0:00.00 sssd_kcm 442771 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 442818 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 442819 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 442820 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 442823 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 442902 20087 20 0 240756 10368 8960 S 0.0 0.0 0:00.00 ssh 442907 root 20 0 0 0 0 I 0.0 0.0 0:00.00 NFSv4 c+ 442982 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 443034 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 443072 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 443240 root 20 0 36756 11364 9572 S 0.0 0.0 0:00.01 sshd 443245 cmpbib 20 0 37076 7204 5248 S 0.0 0.0 0:00.00 sshd 443267 cmpbib 20 0 234180 6128 3952 S 0.0 0.0 0:00.01 bash 443333 cmpbib 20 0 232916 3580 3324 S 0.0 0.0 0:00.00 screen 443336 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 443337 cmpbib 20 0 232432 3840 3456 S 0.0 0.0 0:00.00 mefpp_i+ 443348 cmpbib 20 0 1261424 18560 13312 S 0.0 0.0 0:00.02 starter+ 443367 cmpbib 20 0 7188 3456 3200 S 0.0 0.0 0:00.04 bash 443381 root 20 0 32996 7136 3968 S 0.0 0.0 0:00.00 (udev-w+ 443388 cmpbib 20 0 4232 3200 2944 S 0.0 0.0 0:00.00 bash 443401 cmpbib 20 0 7184 3584 3328 S 0.0 0.0 0:00.00 bash 443416 cmpbib 20 0 7712 4096 3328 S 0.0 0.0 0:00.00 bash ====================== df -h donne: Filesystem Size Used Avail Use% Mounted on overlay 16M 12K 16M 1% / devtmpfs 4.0M 0 4.0M 0% /dev tmpfs 32G 0 32G 0% /dev/shm /dev/nvme0n1p1 96G 53G 38G 59% /var/tmp cantal:/d2/users/cmpbib 9.1T 2.6T 6.1T 30% /users/cmpbib tmpfs 32G 280K 32G 1% /tmp tmpfs 16M 12K 16M 1% /etc/group cantal:/d1/users/cmpgiref 917G 685G 187G 79% /users/cmpgiref /dev/dm-0 458G 108G 327G 25% /pmi ====================== ====================== Nous avons le process group id: 443337 On a tous ces dépôts a prendre en compte: GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation depots_a_compiler: GIREF BIB InterfaceQtVTK doit_avoir_depots_non_propres ne contient rien... on y met: 0 Agent pid 443444 SSH_AGENT_PID: 443444 Identity added: /users/cmpbib/.ssh/id_dsa_giref (/users/cmpbib/.ssh/id_dsa_giref) Identity added: /users/cmpbib/.ssh/id_rsa_giref (/users/cmpbib/.ssh/id_rsa_giref) Configuration des modes pour GIREF depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour TestValidation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour Validation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour InterfaceQtVTK depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour webMEF depots_modes ne contient rien... on y met: opt Configuration des modes pour BIB depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour BIBTestValidation depots_modes ne contient rien... on y met: opt dev nb_proc contient: 8 nb_proc_app ne contient rien... on y met: 8 nb_proc_TV contient: 7 Préparation des 1 dépôts (GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation) dans le map liste_depots. ----------------------------- Traitements pour le dépot GIREF On va 'fetcher' le dépôt GIREF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cleared directory 'dep/CLI11' Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) unregistered for path 'dep/CLI11' Cleared directory 'dep/picojson' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) unregistered for path 'dep/picojson' Cleared directory 'dep/pybind11' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) unregistered for path 'dep/pybind11' Cleared directory 'dep/rapidjson' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) unregistered for path 'dep/rapidjson' Cleared directory 'dep/spdlog' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) unregistered for path 'dep/spdlog' On valide le dépôt GIREF avec la référence: 462b3ba509bc9eccd1f5a1d27562942a64165588 HEAD is now at 462b3ba509 AQL (maintenance, !1623): supprime PPNormeL2::afficheEvaluations, seulement utilisé dans les TVs (et pas vérifié) Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) registered for path 'dep/CLI11' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) registered for path 'dep/picojson' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) registered for path 'dep/pybind11' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) registered for path 'dep/rapidjson' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) registered for path 'dep/spdlog' Submodule path 'dep/CLI11': checked out '4af78beef777e313814b4daff70e2da9171a385a' Submodule path 'dep/picojson': checked out '111c9be5188f7350c2eac9ddaedd8cca3d7bf394' Submodule path 'dep/pybind11': checked out '2fb3d7cbde264a0b3f921e802f287195387e8263' Submodule path 'dep/rapidjson': checked out '083f359f5c36198accc2b9360ce1e32a333231d9' Submodule path 'dep/spdlog': checked out 'ad0e89cbfb4d0c1ce4d097e134eb7be67baebb36' On nettoie le dépôt GIREF: ----------------------------- ----------------------------- Traitements pour le dépot TestValidation On va 'fetcher' le dépôt TestValidation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:TestValidation c2da0817d..6830b87a1 master -> origin/master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:TestValidation * [new tag] dernier_push_TEC_image_fedora_39_sans_petsc_ericc -> dernier_push_TEC_image_fedora_39_sans_petsc_ericc t [tag update] dernier_push_master_ericc -> dernier_push_master_ericc On valide le dépôt TestValidation avec la référence: 6830b87a14b5bc7a2ca3c4d290a451db3d41c392 HEAD is now at 6830b87a1 BUG (IC, mefpp#1821, !698): Donne le chemin absolu pour mefgit.refs On nettoie le dépôt TestValidation: ----------------------------- ----------------------------- Traitements pour le dépot Validation On va 'fetcher' le dépôt Validation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt Validation avec la référence: e217b0fdb9d22cef7599a2e641ead8e037d773bb Removing diffNum HEAD is now at e217b0f BUG (IC, !11): Erreurs liées à la syntaxe bash pour awk... On nettoie le dépôt Validation: ----------------------------- ----------------------------- Traitements pour le dépot InterfaceQtVTK On va 'fetcher' le dépôt InterfaceQtVTK avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:InterfaceQtVTK * [new branch] TEC_warnings_qt_et_vtk -> origin/TEC_warnings_qt_et_vtk * [new tag] dernier_push_TEC_warnings_qt_et_vtk_ericc -> dernier_push_TEC_warnings_qt_et_vtk_ericc Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt InterfaceQtVTK avec la référence: a68d9d698f938e76bdf3a52265927e1836193174 HEAD is now at a68d9d69 BUG (IC, mefpp#1821, !50): Traite le retour de l'appel à "system" pour éliminer un warning de compilation... On nettoie le dépôt InterfaceQtVTK: ----------------------------- ----------------------------- Traitements pour le dépot webMEF On va 'fetcher' le dépôt webMEF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. error: could not lock config file .git/modules/webmef/src/static/paraview-glance/config: No such file or directory warning: Could not unset core.worktree setting in submodule 'webmef/src/static/paraview-glance' Cleared directory 'webmef/src/static/paraview-glance' On valide le dépôt webMEF avec la référence: 06e3445d7f528d58ea800993af73e28a8529cece HEAD is now at 06e3445 BUG (maintenance, !9): revert du commit 8ae36d90cb1762d7954bb8578107d047e184d34d... On nettoie le dépôt webMEF: ----------------------------- ----------------------------- Traitements pour le dépot BIB On va 'fetcher' le dépôt BIB avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt BIB avec la référence: 58c16b3091aab91c5911f08c3b38f2deb6d22444 HEAD is now at 58c16b309 BUG (maintenance, !870): IWYU On nettoie le dépôt BIB: ----------------------------- ----------------------------- Traitements pour le dépot BIBTestValidation On va 'fetcher' le dépôt BIBTestValidation avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. On valide le dépôt BIBTestValidation avec la référence: 9fc640cc0ce99dc6d31cce4f3a6071f07f5563e2 HEAD is now at 9fc640cc0c AQL (maintenance): Ajustement epsilon pour icpc. On nettoie le dépôt BIBTestValidation: ----------------------------- Remarque : $prefix_script été vide, je le met à $prefix_compilation /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++ ** Auto-vérification des scripts de lancement **, relance: 0 Le fichier des mails est /tmp/TV_2024.06.12.10h23m41s.ubk/courriels_personnes_toujours_averties_pour_les_changements_dans_les_compilations.txt Fonction envoieCourrielEtTermine appellée avec 0 Création du virtualenv python /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/virtual_env_python Collecting virtualenv Obtaining dependency information for virtualenv from https://files.pythonhosted.org/packages/0a/02/085eee8570e807db9a1aa905e18c9123efec753ae9021b029115c6e0bb28/virtualenv-20.26.2-py3-none-any.whl.metadata Downloading virtualenv-20.26.2-py3-none-any.whl.metadata (4.4 kB) Collecting distlib<1,>=0.3.7 (from virtualenv) Obtaining dependency information for distlib<1,>=0.3.7 from 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0:00:00 Downloading distlib-0.3.8-py2.py3-none-any.whl (468 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 468.9/468.9 kB 140.7 MB/s eta 0:00:00 Downloading filelock-3.14.0-py3-none-any.whl (12 kB) Downloading platformdirs-4.2.2-py3-none-any.whl (18 kB) Installing collected packages: distlib, platformdirs, filelock, virtualenv Successfully installed distlib-0.3.8 filelock-3.14.0 platformdirs-4.2.2 virtualenv-20.26.2 created virtual environment CPython3.12.3.final.0-64 in 532ms creator CPython3Posix(dest=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/virtual_env_python, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, via=copy, app_data_dir=/users/cmpbib/.local/share/virtualenv) added seed packages: pip==24.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Requirement already satisfied: pip in ./virtual_env_python/lib/python3.12/site-packages (24.0) Collecting bokeh (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached bokeh-3.4.1-py3-none-any.whl.metadata (12 kB) Collecting CT3 (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 2)) Using cached CT3-3.3.3.post1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (3.4 kB) Collecting cheetah3 (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 3)) Using cached Cheetah3-3.2.6.post1-cp312-cp312-linux_x86_64.whl Collecting numpy (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 4)) Using cached numpy-1.26.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting pandas (from -r 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scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Collecting six (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 9)) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting matplotlib (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached matplotlib-3.9.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting Jinja2>=2.9 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting contourpy>=1.2 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached contourpy-1.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting packaging>=16.8 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) Collecting pillow>=7.1.0 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached pillow-10.3.0-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (9.2 kB) Collecting PyYAML>=3.10 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting tornado>=6.2 (from bokeh->-r 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Collecting cycler>=0.10 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached fonttools-4.53.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (162 kB) Collecting kiwisolver>=1.3.1 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached kiwisolver-1.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting pyparsing>=2.3.1 (from matplotlib->-r 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python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.2 MB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached matplotlib-3.9.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) Using cached contourpy-1.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (309 kB) Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) Using cached fonttools-4.53.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) Using cached kiwisolver-1.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.5 MB) Using cached packaging-24.1-py3-none-any.whl (53 kB) Using cached pillow-10.3.0-cp312-cp312-manylinux_2_28_x86_64.whl (4.5 MB) Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) Using cached PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB) Using cached tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (436 kB) Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) Using cached xyzservices-2024.6.0-py3-none-any.whl (83 kB) Using cached MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (28 kB) Installing collected packages: pytz, xyzservices, tzdata, tornado, six, PyYAML, pyparsing, psutil, pillow, packaging, numpy, MarkupSafe, kiwisolver, fonttools, cycler, CT3, cheetah3, scipy, python-dateutil, Jinja2, contourpy, pandas, matplotlib, bokeh Successfully installed CT3-3.3.3.post1 Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 bokeh-3.4.1 cheetah3-3.2.6.post1 contourpy-1.2.1 cycler-0.12.1 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 numpy-1.26.4 packaging-24.1 pandas-2.2.2 pillow-10.3.0 psutil-5.9.8 pyparsing-3.1.2 python-dateutil-2.9.0.post0 pytz-2024.1 scipy-1.13.1 six-1.16.0 tornado-6.4.1 tzdata-2024.1 xyzservices-2024.6.0 Fin création du virtualenv Execution du hook de configuration /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/GIREF/scripts/Petsc/compile-petsc-master.sh debug ============================================================================================= Mode: mode = debug Variables d'environnement utilisées: vpetsc = petsc-main prefix = /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/petsc-main-debug WGET = git petsc_GIT = petsc_SHA = MPIdir = /opt/mpi/openmpi-4.1.6-opt LibLAPACK = mkl MKLROOT = /opt/intel/oneapi/mkl/2024.1 LibLAPACK_DIR = AvecIndices64bit = 0 WITH_XXX_COMPILERS = OPTFLAGS = copie_configure_log = /users/cmpgiref/public_html/petsc-main-debug ============================================================================================= Assurez-vous d'avoir installé la MKL avec l'option 'cluster'. On a détecté que la librairie MPI est: 'OPENMPI'. OPTIONS_COPTFLAGS= git clone --depth 100 https://gitlab.com/petsc/petsc.git -b main petsc-main-debug Cloning into 'petsc-main-debug'... SHA GIT courant: commit a623e290c7eaa252b385564179837fe27521fbac Merge: b2e8165f 5d83a8b1 Author: Satish Balay Date: Wed Jun 12 03:37:04 2024 +0000 Merge branch 'barry/2024-05-29/minor-fortran-stub-cleanup' into 'main' More improvements to Fortran stubs and interfaces See merge request petsc/petsc!7598 ============================================================================================= Voici la commande de configuration: ./configure --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_g++/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib=-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 ============================================================================================= ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-party.git for PARTY ============================================================================================= ============================================================================================= Compiling party; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/hdf5-1.14.3-p1.tar.bz2 for HDF5 ============================================================================================= ============================================================================================= Running configure on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/Kitware/CMake/releases/download/v3.29.3/cmake-3.29.3.tar.gz for CMAKE ============================================================================================= ============================================================================================= Running configure on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-metis.git for METIS ============================================================================================= ============================================================================================= Configuring METIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS ============================================================================================= ============================================================================================= Configuring PARMETIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH ============================================================================================= ============================================================================================= Compiling PTScotch; this may take several minutes ============================================================================================= ============================================================================================= Installing PTScotch; this may take several minutes ============================================================================================= ============================================================================================= BLASLAPACK: Looking for multi-threaded MKL for C/Pardiso ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/spai-3.0-p1.tar.gz for SPAI ============================================================================================= ============================================================================================= Configuring, compiling and installing Spai; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use ml at https://trilinos.github.io ************************************************************************************************** ============================================================================================= Trying to download https://gitlab.com/petsc/pkg-trilinos-ml for ML ============================================================================================= ********************************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------------- Cannot build ml in a folder containing "++" ********************************************************************************************* Erreur à la configuration de PETSC! cp: cannot stat 'make.log': No such file or directory cp: cannot stat '*/externalpackages/git.slepc/make.log': No such file or directory cp: cannot stat '*/externalpackages/git.slepc/configure.log': No such file or directory