====================== Début: 2024.06.12 11h57m25s ====================== nettoyage: 1er find: nettoyage: 2e find: ================================= Informations sur l'environnement: ================================= ulimit -a: real-time non-blocking time (microseconds, -R) unlimited core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 256340 max locked memory (kbytes, -l) 8192 max memory size (kbytes, -m) unlimited open files (-n) 524288 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) 8192 cpu time (seconds, -t) unlimited max user processes (-u) 256340 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited hostname -I: 132.203.7.54 192.168.122.1 172.17.0.1 uname -a: Linux asti 6.8.9-100.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 2 18:50:49 UTC 2024 x86_64 GNU/Linux ================================= Les arguments passés à ce script: La variable PATH contient: /opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/cluster/logiciels/bin La variable LD_LIBRARY_PATH contient: /pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: La variable BASH contient: /usr/bin/bash ====================== env donne: APPIMAGE_EXTRACT_AND_RUN=1 autocopie=1 autre_message_dans_bilan=Voici les logs de Petsc:\nSHA du dépôt (si applicable): ${GIT_COMMIT_PETSC}\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_RDict.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_test.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_streams.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_make.log\n\n autres_options_make=--output-sync=line baspage_html=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/Validation/script/baspage_compilation BCS_FILELOG_NAME=stdout BIB_GEOGEC_FORMAT=HDF BIB_RSTDLR_FORMAT=HDF CCACHE_COMMENTS=yes CCACHE_DIR=/pmi/cmpbib/.ccache CCACHE_HARDLINK=1 CCACHE_SLOPPINESS=include_file_mtime cheminConf=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/BIBTestValidation/Scripts/CompilAuto/parametres_giref_avec_bib.json CMAKE_PREFIX_PATH=/opt/intel/oneapi/mkl/2024.1/lib/cmake: compilateur=g++-13.2.1/openmpi-4.1.6/petsc-master copie_configure_log=/users/cmpgiref/public_html/petsc-main-debug CPATH=/opt/intel/oneapi/mkl/2024.1/include: defaillance=0 depots_a_compiler=GIREF BIB InterfaceQtVTK depots_supplementaires=BIB BIBTestValidation entete_html=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/Validation/script/entete_compilation fichier_history=2024.06.12.11h57m25s GIREF_FORMAT_BINAIRE_DEFAUT=1 GIREF_SUPPORT_PILOTE=OUI GIREF_SUPPORT_PYBIND11=OUI GIREF_ULIMIT=-c 0 heure_depart=1718207845 HOME_PREGIREF=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/src/commun/Util/ HOME=/users/cmpbib hook_configuration_env_args=debug hook_configuration_env=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/scripts/Petsc/compile-petsc-master.sh LANG=en_US.UTF8 LC_ALL=en_US.UTF8 LC_CTYPE=en_US.UTF8 LD_LIBRARY_PATH=/pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: LibLAPACK=mkl LIBRARY_PATH=/opt/intel/oneapi/mkl/2024.1/lib/: lien_web=https://cantal.giref.ulaval.ca/cmpbib/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp lRetour=0 machine=asti /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/fedora-devel-39_cc-natif_openmpi-4.1.6-opt_mkl-2024.1_no-petsc_cc-natif_qt-paquet_vtk_giref-singularity_complete.sif machine_sans_no_port=asti MEFPP_DEBUGGER=abort MEFPP_IC_DEBUG= MEFPP_TV_DEBUGGER=abort MKL_CBWR=COMPATIBLE MKL_NUM_THREADS=1 MKLROOT=/opt/intel/oneapi/mkl/2024.1 MPIdir=/opt/mpi/openmpi-4.1.6-opt mpi_v=2 MV2_ENABLE_AFFINITY=0 nb_proc=8 nb_proc_TV=7 NLSPATH=/opt/intel/oneapi/mkl/2024.1/share/locale/%l_%t/%N: nom_compilation=compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp nom_image=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/fedora-devel-39_cc-natif_openmpi-4.1.6-opt_mkl-2024.1_no-petsc_cc-natif_qt-paquet_vtk_giref-singularity_complete.sif OMPI_MCA_hwloc_base_binding_policy=none OMPI_MCA_mpi_yield_when_idle=1 OPENBLAS_NUM_THREADS=1 OS=singularity Fedora 39 PATH=/opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/cluster/logiciels/bin path_web=/users/cmpbib/compilations/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp pDepots_ref=declare -A depots_ref=([Pilote]="1a13d98f9654e23e14377887988bd7e2d7db9d7c" [webMEF]="06e3445d7f528d58ea800993af73e28a8529cece" [GIREF]="462b3ba509bc9eccd1f5a1d27562942a64165588" [Logger]="af2a3f4910ecd7874649bafa9ba4351a8dc2ca4c" [Validation]="e217b0fdb9d22cef7599a2e641ead8e037d773bb" [TestValidation]="526d3d3d9c12625d7979fe657483bcf13d7619e2" [InterfaceQtVTK]="09e72c0d88f379afc716b4b95200e972f2753916" [BIB]="58c16b3091aab91c5911f08c3b38f2deb6d22444" [BIBTestValidation]="9fc640cc0ce99dc6d31cce4f3a6071f07f5563e2" ) pDepots_url=declare -A depots_url=([BIB]="bibgit@cantal.giref.ulaval.ca:" [BIBTestValidation]="bibgit@cantal.giref.ulaval.ca:" ) perlPath=/usr/bin PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2024.1/lib/pkgconfig: pref_html=/users/cmpbib/compilations/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp prefix_compilation=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp prefix_exec=/usr/bin prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PWD=/pmi/cmpbib SCREENDIR=/users/cmpbib/.screen script_calcul_bilan=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/Compyl/calcul_bilan.py script_crontab=TestValidation/Scripts/CompilAuto/MEFPP_IC_docker/compilations_autos/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/script_compilation_linux_singularity.sh script_dir=/users/cmpgiref/gestion_mefpp/bin SHLVL=3 sous_script_TV=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/BIBTestValidation/Scripts/BIB_sous_script_TV.sh Temps_Total_Maximum=28800 type_os=Linux umask=022 userid=cmpbib _=/usr/bin/env var_LD_LIBRARY_PATH=/pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: WGET=git ====================== top donne: top - 11:57:26 up 21:41, 0 user, load average: 0.08, 0.04, 0.48 Tasks: 371 total, 1 running, 370 sleeping, 0 stopped, 0 zombie %Cpu(s): 0.0 us, 4.0 sy, 0.0 ni, 96.0 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st MiB Mem : 64131.5 total, 41677.0 free, 2295.9 used, 20986.9 buff/cache MiB Swap: 12288.0 total, 12288.0 free, 0.0 used. 61835.6 avail Mem PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1 root 20 0 170004 15404 9596 S 0.0 0.0 0:06.64 systemd 2 root 20 0 0 0 0 S 0.0 0.0 0:00.06 kthreadd 3 root 20 0 0 0 0 S 0.0 0.0 0:00.00 pool_wo+ 4 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 5 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 6 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 7 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 9 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 12 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 14 root 20 0 0 0 0 I 0.0 0.0 0:00.00 rcu_tas+ 15 root 20 0 0 0 0 I 0.0 0.0 0:00.00 rcu_tas+ 16 root 20 0 0 0 0 I 0.0 0.0 0:00.00 rcu_tas+ 17 root 20 0 0 0 0 S 0.0 0.0 0:00.29 ksoftir+ 18 root 20 0 0 0 0 I 0.0 0.0 0:02.38 rcu_pre+ 19 root rt 0 0 0 0 S 0.0 0.0 0:00.11 migrati+ 20 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 21 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/0 22 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/1 23 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 24 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 25 root 20 0 0 0 0 S 0.0 0.0 0:00.27 ksoftir+ 27 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 28 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/2 29 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 30 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 31 root 20 0 0 0 0 S 0.0 0.0 0:00.27 ksoftir+ 33 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 34 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/3 35 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 36 root rt 0 0 0 0 S 0.0 0.0 0:00.38 migrati+ 37 root 20 0 0 0 0 S 0.0 0.0 0:00.25 ksoftir+ 39 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 40 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/4 41 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 42 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 43 root 20 0 0 0 0 S 0.0 0.0 0:00.27 ksoftir+ 45 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 46 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/5 47 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 48 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 49 root 20 0 0 0 0 S 0.0 0.0 0:00.30 ksoftir+ 51 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 52 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/6 53 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 54 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 55 root 20 0 0 0 0 S 0.0 0.0 0:00.28 ksoftir+ 57 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 58 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/7 59 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 60 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 61 root 20 0 0 0 0 S 0.0 0.0 0:00.28 ksoftir+ 63 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 64 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/8 65 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 66 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 67 root 20 0 0 0 0 S 0.0 0.0 0:00.27 ksoftir+ 69 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 70 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/9 71 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 72 root rt 0 0 0 0 S 0.0 0.0 0:00.38 migrati+ 73 root 20 0 0 0 0 S 0.0 0.0 0:00.25 ksoftir+ 75 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 76 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/10 77 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 78 root rt 0 0 0 0 S 0.0 0.0 0:00.38 migrati+ 79 root 20 0 0 0 0 S 0.0 0.0 0:00.38 ksoftir+ 81 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 82 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/11 83 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 84 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 85 root 20 0 0 0 0 S 0.0 0.0 0:00.26 ksoftir+ 87 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 88 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/12 89 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 90 root rt 0 0 0 0 S 0.0 0.0 0:00.39 migrati+ 91 root 20 0 0 0 0 S 0.0 0.0 0:00.25 ksoftir+ 93 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 94 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/13 95 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 96 root rt 0 0 0 0 S 0.0 0.0 0:00.40 migrati+ 97 root 20 0 0 0 0 S 0.0 0.0 0:00.30 ksoftir+ 99 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 100 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/14 101 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 102 root rt 0 0 0 0 S 0.0 0.0 0:00.40 migrati+ 103 root 20 0 0 0 0 S 0.0 0.0 0:00.27 ksoftir+ 105 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 106 root 20 0 0 0 0 S 0.0 0.0 0:00.00 cpuhp/15 107 root -51 0 0 0 0 S 0.0 0.0 0:00.00 idle_in+ 108 root rt 0 0 0 0 S 0.0 0.0 0:00.36 migrati+ 109 root 20 0 0 0 0 S 0.0 0.0 0:00.34 ksoftir+ 111 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 112 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kdevtmp+ 113 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 114 root 20 0 0 0 0 S 0.0 0.0 0:00.02 kauditd 116 root 20 0 0 0 0 S 0.0 0.0 0:00.00 oom_rea+ 118 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 119 root 20 0 0 0 0 S 0.0 0.0 0:00.13 kcompac+ 120 root 25 5 0 0 0 S 0.0 0.0 0:00.00 ksmd 121 root 39 19 0 0 0 S 0.0 0.0 0:00.00 khugepa+ 122 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 123 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 124 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 125 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 126 root -51 0 0 0 0 S 0.0 0.0 0:00.43 irq/9-a+ 127 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 128 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 129 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 130 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 131 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 132 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 133 root -51 0 0 0 0 S 0.0 0.0 0:00.00 watchdo+ 135 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 137 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kswapd0 146 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 154 root -51 0 0 0 0 S 0.0 0.0 0:00.00 irq/122+ 155 root -51 0 0 0 0 S 0.0 0.0 0:00.00 irq/122+ 156 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 157 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 158 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 159 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 160 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 161 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 162 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 163 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 164 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 165 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 166 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 167 root 20 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh+ 168 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 172 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 173 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 174 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 175 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 181 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 193 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 306 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 307 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 322 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 355 root 0 -20 0 0 0 I 0.0 0.0 0:00.10 kworker+ 357 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 360 root 0 -20 0 0 0 I 0.0 0.0 0:00.12 kworker+ 372 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 373 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 376 root 0 -20 0 0 0 I 0.0 0.0 0:00.01 kworker+ 378 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 379 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 381 root 0 -20 0 0 0 I 0.0 0.0 0:00.02 kworker+ 446 root 0 -20 0 0 0 I 0.0 0.0 0:00.06 kworker+ 471 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 474 root 0 -20 0 0 0 I 0.0 0.0 0:00.01 kworker+ 476 root 0 -20 0 0 0 I 0.0 0.0 0:00.03 kworker+ 481 root 0 -20 0 0 0 I 0.0 0.0 0:00.02 kworker+ 482 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 555 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 556 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 557 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 558 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 579 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 581 root -51 0 0 0 0 S 0.0 0.0 0:00.00 card0-c+ 582 root -51 0 0 0 0 S 0.0 0.0 0:00.00 card0-c+ 583 root -51 0 0 0 0 S 0.0 0.0 0:00.00 card0-c+ 601 root 20 0 0 0 0 S 0.0 0.0 0:00.08 jbd2/nv+ 602 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 690 root 20 0 105920 38240 37344 S 0.0 0.1 0:00.99 systemd+ 704 root 20 0 32992 10368 7552 S 0.0 0.0 0:00.51 systemd+ 860 root -51 0 0 0 0 S 0.0 0.0 0:00.00 irq/144+ 884 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 947 root 20 0 0 0 0 S 0.0 0.0 0:00.47 jbd2/nv+ 948 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 950 root 20 0 0 0 0 S 0.0 0.0 0:00.02 jbd2/sd+ 951 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 974 rpc 20 0 11588 5244 4476 S 0.0 0.0 0:00.02 rpcbind 975 964 20 0 15656 7424 6656 S 0.0 0.0 0:21.70 systemd+ 976 systemd+ 20 0 22984 13184 10752 S 0.0 0.0 0:02.71 systemd+ 977 root 16 -4 26928 3104 2420 S 0.0 0.0 0:00.12 auditd 1000 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 1001 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 1006 dbus 20 0 9552 4504 3556 S 0.0 0.0 0:00.04 dbus-br+ 1007 dbus 20 0 7532 4784 2304 S 0.0 0.0 0:00.93 dbus-br+ 1009 root 20 0 358216 45544 19752 S 0.0 0.1 0:00.63 firewal+ 1014 root -2 0 302628 5376 4992 S 0.0 0.0 0:00.01 low-mem+ 1015 root 20 0 3136 1920 1792 S 0.0 0.0 0:00.00 mcelog 1017 root 20 0 524600 6620 6236 S 0.0 0.0 0:00.12 power-p+ 1019 daemon 20 0 321204 8956 7168 S 0.0 0.0 0:37.92 rngd 1020 172 21 1 21452 2944 2816 S 0.0 0.0 0:00.17 rtkit-d+ 1021 root 20 0 10568 6272 4864 S 0.0 0.0 0:00.03 smartd 1023 root 20 0 522260 6400 6016 S 0.0 0.0 0:00.01 switche+ 1024 root 20 0 15236 7552 6784 S 0.0 0.0 0:00.66 systemd+ 1025 root 20 0 603988 10364 9596 S 0.0 0.0 0:01.29 thermald 1028 root 20 0 467216 15780 13348 S 0.0 0.0 0:06.81 udisksd 1041 root -2 0 0 0 0 S 0.0 0.0 0:00.01 psimon 1056 systemd+ 20 0 395988 11764 7368 S 0.0 0.0 0:04.33 polkitd 1064 root 39 19 4836 3200 2816 S 0.0 0.0 0:00.00 alsactl 1101 994 20 0 85348 4100 3576 S 0.0 0.0 0:00.06 chronyd 1109 root 20 0 535524 9208 6892 S 0.0 0.0 0:00.71 account+ 1115 root 20 0 58100 9216 7808 S 0.0 0.0 0:00.46 systemd+ 1169 root 20 0 305740 6784 6144 S 0.0 0.0 0:00.07 uresour+ 1206 root 20 0 1034308 21704 19144 S 0.0 0.0 0:03.46 Network+ 1241 root 20 0 246928 10496 9088 S 0.0 0.0 0:00.00 cupsd 1242 root 20 0 137856 25344 20480 S 0.0 0.0 0:04.31 gitlab-+ 1253 root 20 0 14124 8576 7424 S 0.0 0.0 0:00.04 sshd 1257 976 25 5 15128 7448 6620 S 0.0 0.0 0:07.27 iceccd 1258 root 20 0 270948 3748 2992 S 0.0 0.0 0:00.01 gssproxy 1267 root 20 0 2243540 43020 30336 S 0.0 0.1 0:07.02 contain+ 1292 root 20 0 3264 1920 1792 S 0.0 0.0 0:00.00 atd 1303 root 20 0 525456 7936 7296 S 0.0 0.0 0:00.01 gdm 1314 40106 20 0 19468 11392 9472 S 0.0 0.0 0:00.58 systemd 1400 root 20 0 471112 10856 9576 S 0.0 0.0 0:00.01 gdm-ses+ 1403 40106 20 0 45596 7480 2048 S 0.0 0.0 0:00.00 (sd-pam) 1484 42 20 0 18672 11520 9472 S 0.0 0.0 0:00.68 systemd 1485 42 20 0 36556 7484 2048 S 0.0 0.0 0:00.00 (sd-pam) 1558 root 20 0 13572 1792 1280 S 0.0 0.0 0:00.00 xinetd 1670 42 20 0 448268 5888 5504 S 0.0 0.0 0:00.00 gdm-x-s+ 1674 42 20 0 2349988 79960 51820 S 0.0 0.1 0:01.29 Xorg 1974 root 20 0 48004 3880 3072 S 0.0 0.0 0:00.08 master 1977 89 20 0 60000 9344 8320 S 0.0 0.0 0:00.01 qmgr 2043 985 20 0 8808 1792 1536 S 0.0 0.0 0:00.00 dnsmasq 2044 root 20 0 8808 1024 768 S 0.0 0.0 0:00.00 dnsmasq 2091 42 20 0 9052 3960 3576 S 0.0 0.0 0:00.00 dbus-br+ 2092 42 20 0 4740 2432 2304 S 0.0 0.0 0:00.01 dbus-br+ 2094 42 20 0 5012 2032 1904 S 0.0 0.0 0:00.00 dbus-ru+ 2095 42 20 0 19592 4736 4352 S 0.0 0.0 0:00.08 dbus-da+ 2096 42 20 0 912540 15744 13568 S 0.0 0.0 0:00.15 gnome-s+ 2116 42 20 0 380776 7424 6784 S 0.0 0.0 0:00.00 at-spi-+ 2122 42 20 0 19168 4608 4352 S 0.0 0.0 0:00.00 dbus-da+ 2144 42 20 0 6076704 173356 104268 S 0.0 0.3 0:13.30 gnome-s+ 2178 42 20 0 1916520 79888 63288 S 0.0 0.1 0:00.13 mutter-+ 2239 42 20 0 521840 5868 5484 S 0.0 0.0 0:00.00 xdg-per+ 2248 root 20 0 522860 6784 6016 S 0.0 0.0 0:00.08 upowerd 2256 42 9 -11 326440 12656 8176 S 0.0 0.0 0:00.04 pipewire 2257 42 9 -11 620600 18744 13752 S 0.0 0.0 0:00.25 wireplu+ 2259 42 9 -11 315716 8960 7168 S 0.0 0.0 0:00.02 pipewir+ 2295 42 20 0 3027456 28552 23168 S 0.0 0.0 0:00.04 gjs 2296 root 20 0 13680 6016 5248 S 0.0 0.0 0:00.04 wpa_sup+ 2317 42 20 0 233500 7552 6912 S 0.0 0.0 0:00.01 at-spi2+ 2320 982 20 0 529568 11744 9824 S 0.0 0.0 0:00.08 colord 2331 42 20 0 753120 10880 9728 S 0.0 0.0 0:00.02 gsd-sha+ 2333 42 20 0 624092 17008 14960 S 0.0 0.0 0:00.05 gsd-wac+ 2336 42 20 0 625964 17792 16000 S 0.0 0.0 0:00.11 gsd-col+ 2337 42 20 0 624052 17024 15104 S 0.0 0.0 0:00.02 gsd-key+ 2338 42 20 0 692120 15568 13392 S 0.0 0.0 0:00.13 gsd-pri+ 2345 42 20 0 602996 13148 6528 S 0.0 0.0 0:00.32 ibus-da+ 2347 42 20 0 743648 6400 6016 S 0.0 0.0 0:00.01 gsd-rfk+ 2349 42 20 0 684648 16436 14644 S 0.0 0.0 0:02.02 gsd-sma+ 2350 42 20 0 614564 11136 9984 S 0.0 0.0 0:00.01 gsd-dat+ 2357 42 20 0 769980 20352 18048 S 0.0 0.0 0:00.09 gsd-med+ 2366 42 20 0 522128 5888 5504 S 0.0 0.0 0:00.00 gsd-scr+ 2370 42 20 0 604540 8832 8064 S 0.0 0.0 0:00.00 gsd-sou+ 2374 42 20 0 596544 6144 5760 S 0.0 0.0 0:00.00 gsd-a11+ 2377 42 20 0 599204 7680 7040 S 0.0 0.0 0:01.71 gsd-hou+ 2381 42 20 0 699404 18432 16512 S 0.0 0.0 0:00.11 gsd-pow+ 2383 42 20 0 229044 5248 4864 S 0.0 0.0 0:00.00 dconf-s+ 2411 42 20 0 636376 17280 15104 S 0.0 0.0 0:00.01 gsd-pri+ 2443 42 20 0 523032 7036 6524 S 0.0 0.0 0:00.00 ibus-dc+ 2446 42 20 0 476872 17388 15596 S 0.0 0.0 0:00.01 ibus-x11 2449 42 20 0 522964 7012 6500 S 0.0 0.0 0:00.00 ibus-po+ 2465 root 20 0 321772 6912 6016 S 0.0 0.0 0:01.04 pcscd 2593 42 20 0 2896376 28124 23168 S 0.0 0.0 0:00.05 gjs 2656 42 20 0 449180 6912 6400 S 0.0 0.0 0:00.00 ibus-en+ 2678 42 20 0 521840 5868 5484 S 0.0 0.0 0:00.00 xdg-per+ 2709 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 2726 rpcuser 20 0 9484 3092 2408 S 0.0 0.0 0:00.01 rpc.sta+ 2761 root 20 0 233696 3832 3064 S 0.0 0.0 0:00.02 crond 2990 42 20 0 2794656 157488 58540 S 0.0 0.2 0:00.90 python3 3032 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3039 root 20 0 0 0 0 I 0.0 0.0 0:00.00 NFSv4 c+ 7968 89 20 0 60888 11620 10340 S 0.0 0.0 0:00.00 tlsmgr 32635 root 20 0 36756 11236 9444 S 0.0 0.0 0:00.00 sshd 32643 20087 20 0 18424 11632 9584 S 0.0 0.0 0:00.34 systemd 32648 20087 20 0 193060 7536 2048 S 0.0 0.0 0:00.00 (sd-pam) 32672 20087 20 0 37208 7256 5120 S 0.0 0.0 0:00.55 sshd 32689 20087 20 0 235520 7424 3968 S 0.0 0.0 0:00.14 bash 33532 root 20 0 36756 11248 9456 S 0.0 0.0 0:00.01 sshd 33537 20087 20 0 37076 7132 5248 S 0.0 0.0 0:00.19 sshd 33553 20087 20 0 235488 7040 3712 S 0.0 0.0 0:00.12 bash 330031 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330032 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330034 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330035 root 20 0 0 0 0 S 0.0 0.0 0:00.54 dmcrypt+ 330210 root 20 0 0 0 0 S 0.0 0.0 0:00.29 jbd2/dm+ 330211 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 330919 root 20 0 241336 10236 8572 S 0.0 0.0 0:00.02 sssd 330921 root 20 0 244568 15576 12888 S 0.0 0.0 0:00.20 sssd_be 330922 root 20 0 275484 46712 44408 S 0.0 0.1 0:00.66 sssd_nss 330923 root 20 0 243620 12800 11264 S 0.0 0.0 0:00.32 sssd_pam 330924 root 20 0 240416 9300 8148 S 0.0 0.0 0:00.02 sssd_au+ 330925 root 20 0 724932 10268 8400 S 0.0 0.0 0:00.08 automou+ 330946 root 20 0 2217436 82356 54656 S 0.0 0.1 0:00.81 dockerd 365143 root 20 0 0 0 0 I 0.0 0.0 0:00.37 kworker+ 442640 root 20 0 36760 11136 9344 S 0.0 0.0 0:00.00 sshd 442645 20087 20 0 37516 8628 6656 S 0.0 0.0 0:00.00 sshd 443072 root 20 0 0 0 0 I 0.0 0.0 0:00.12 kworker+ 501771 root 20 0 0 0 0 I 0.0 0.0 0:01.40 kworker+ 501946 root 20 0 0 0 0 I 0.0 0.0 0:00.26 kworker+ 502007 root 20 0 0 0 0 I 0.0 0.0 0:00.07 kworker+ 502013 root 20 0 0 0 0 I 0.0 0.0 0:00.12 kworker+ 502015 root 20 0 0 0 0 I 0.0 0.0 0:00.40 kworker+ 502023 root 20 0 0 0 0 I 0.0 0.0 0:00.74 kworker+ 502025 root 20 0 0 0 0 I 0.0 0.0 0:00.37 kworker+ 502027 root 20 0 0 0 0 I 0.0 0.0 0:00.41 kworker+ 502033 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 503353 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 504473 root 20 0 0 0 0 I 0.0 0.0 0:00.33 kworker+ 504475 root 20 0 0 0 0 I 0.0 0.0 0:00.41 kworker+ 504565 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 504568 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 504572 root 20 0 0 0 0 I 0.0 0.0 0:05.26 kworker+ 504574 root 20 0 0 0 0 I 0.0 0.0 0:00.09 kworker+ 504577 root 20 0 0 0 0 I 0.0 0.0 0:00.33 kworker+ 504579 root 20 0 0 0 0 I 0.0 0.0 0:00.14 kworker+ 504583 root 20 0 0 0 0 I 0.0 0.0 0:00.11 kworker+ 504608 root 20 0 0 0 0 I 0.0 0.0 0:00.32 kworker+ 504612 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 504616 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 504642 root 20 0 0 0 0 I 0.0 0.0 0:00.32 kworker+ 504649 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 504669 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 504685 root 20 0 0 0 0 I 0.0 0.0 0:00.71 kworker+ 504689 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 504690 root 20 0 0 0 0 I 0.0 0.0 0:00.52 kworker+ 504783 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 504826 root 20 0 0 0 0 I 0.0 0.0 0:00.45 kworker+ 504827 root 20 0 0 0 0 I 0.0 0.0 0:00.73 kworker+ 504831 root 20 0 0 0 0 I 0.0 0.0 0:00.08 kworker+ 504834 root 20 0 0 0 0 I 0.0 0.0 0:00.12 kworker+ 504843 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 504866 root 20 0 0 0 0 I 0.0 0.0 0:00.49 kworker+ 504868 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 504880 root 20 0 0 0 0 I 0.0 0.0 0:00.40 kworker+ 504890 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 504903 root 20 0 0 0 0 I 0.0 0.0 0:00.00 NFSv4 c+ 504940 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 504956 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 504958 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 504960 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 505298 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505401 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505687 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505688 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505710 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505717 root 20 0 36760 11240 9448 S 0.0 0.0 0:00.00 sshd 505723 cmpbib 20 0 18448 11620 9572 S 0.0 0.0 0:00.10 systemd 505727 cmpbib 20 0 193960 8588 2048 S 0.0 0.0 0:00.00 (sd-pam) 505755 cmpbib 20 0 37076 7132 5120 S 0.0 0.0 0:00.00 sshd 505771 cmpbib 20 0 234312 6256 4080 S 0.0 0.0 0:00.02 bash 505835 89 20 0 59804 9344 8320 S 0.0 0.0 0:00.00 pickup 505847 root 39 19 503784 190500 33880 S 0.0 0.3 0:01.27 dnf 505867 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 505868 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505869 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505870 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505871 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505872 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505873 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505874 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505875 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505876 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 505887 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505888 cmpbib 20 0 232916 3440 3184 S 0.0 0.0 0:00.00 screen 505889 cmpbib 20 0 233316 2316 1536 S 0.0 0.0 0:00.00 screen 505890 cmpbib 20 0 232828 4352 3584 S 0.0 0.0 0:00.00 bash 505893 cmpbib 30 10 232432 3840 3456 S 0.0 0.0 0:00.00 mefpp_i+ 505904 cmpbib 30 10 1261424 18304 13696 S 0.0 0.0 0:00.02 starter+ 505922 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 505923 cmpbib 30 10 7188 3328 3072 S 0.0 0.0 0:00.03 bash 505936 root 20 0 32996 7136 3968 S 0.0 0.0 0:00.00 (udev-w+ 505944 cmpbib 30 10 4232 3328 3072 S 0.0 0.0 0:00.00 bash 505957 cmpbib 30 10 7184 3328 3072 S 0.0 0.0 0:00.00 bash 505972 cmpbib 30 10 7712 4096 3328 S 0.0 0.0 0:00.00 bash 505991 cmpbib 30 10 11724 5888 3840 R 0.0 0.0 0:00.01 top ====================== df -h donne: Filesystem Size Used Avail Use% Mounted on overlay 16M 12K 16M 1% / devtmpfs 4.0M 0 4.0M 0% /dev tmpfs 32G 0 32G 0% /dev/shm /dev/nvme0n1p1 96G 53G 38G 59% /var/tmp cantal:/d2/users/cmpbib 9.1T 2.6T 6.1T 30% /users/cmpbib tmpfs 32G 452K 32G 1% /tmp tmpfs 16M 12K 16M 1% /etc/group cantal:/d1/users/cmpgiref 917G 685G 187G 79% /users/cmpgiref /dev/dm-0 458G 90G 346G 21% /pmi ====================== ====================== Nous avons le process group id: 505893 On a tous ces dépôts a prendre en compte: GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation depots_a_compiler: GIREF BIB InterfaceQtVTK doit_avoir_depots_non_propres ne contient rien... on y met: 0 Agent pid 506000 SSH_AGENT_PID: 506000 Identity added: /users/cmpbib/.ssh/id_dsa_giref (/users/cmpbib/.ssh/id_dsa_giref) Identity added: /users/cmpbib/.ssh/id_rsa_giref (/users/cmpbib/.ssh/id_rsa_giref) Configuration des modes pour GIREF depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour TestValidation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour Validation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour InterfaceQtVTK depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour webMEF depots_modes ne contient rien... on y met: opt Configuration des modes pour BIB depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour BIBTestValidation depots_modes ne contient rien... on y met: opt dev nb_proc contient: 8 nb_proc_app ne contient rien... on y met: 8 nb_proc_TV contient: 7 Préparation des 1 dépôts (GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation) dans le map liste_depots. ----------------------------- Traitements pour le dépot GIREF On va clôner le dépôt GIREF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone mefgit@cantal.giref.ulaval.ca:GIREF Cloning into 'GIREF'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) registered for path 'dep/CLI11' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) registered for path 'dep/picojson' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) registered for path 'dep/pybind11' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) registered for path 'dep/rapidjson' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) registered for path 'dep/spdlog' Cloning into '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/dep/CLI11'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cloning into '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/dep/picojson'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cloning into '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/dep/pybind11'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cloning into '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/dep/rapidjson'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Cloning into '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/dep/spdlog'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Submodule path 'dep/CLI11': checked out '4af78beef777e313814b4daff70e2da9171a385a' Submodule path 'dep/picojson': checked out '111c9be5188f7350c2eac9ddaedd8cca3d7bf394' Submodule path 'dep/pybind11': checked out '2fb3d7cbde264a0b3f921e802f287195387e8263' Submodule path 'dep/rapidjson': checked out '083f359f5c36198accc2b9360ce1e32a333231d9' Submodule path 'dep/spdlog': checked out 'ad0e89cbfb4d0c1ce4d097e134eb7be67baebb36' Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt GIREF avec la référence: 462b3ba509bc9eccd1f5a1d27562942a64165588 HEAD is now at 462b3ba509 AQL (maintenance, !1623): supprime PPNormeL2::afficheEvaluations, seulement utilisé dans les TVs (et pas vérifié) Submodule path 'dep/CLI11': checked out '4af78beef777e313814b4daff70e2da9171a385a' Submodule path 'dep/picojson': checked out '111c9be5188f7350c2eac9ddaedd8cca3d7bf394' Submodule path 'dep/pybind11': checked out '2fb3d7cbde264a0b3f921e802f287195387e8263' Submodule path 'dep/rapidjson': checked out '083f359f5c36198accc2b9360ce1e32a333231d9' Submodule path 'dep/spdlog': checked out 'ad0e89cbfb4d0c1ce4d097e134eb7be67baebb36' On nettoie le dépôt GIREF: ----------------------------- ----------------------------- Traitements pour le dépot TestValidation On va clôner le dépôt TestValidation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone mefgit@cantal.giref.ulaval.ca:TestValidation Cloning into 'TestValidation'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Updating files: 21% (11316/53248) Updating files: 22% (11715/53248) Updating files: 23% (12248/53248) Updating files: 24% (12780/53248) Updating files: 25% (13312/53248) Updating files: 26% (13845/53248) Updating files: 27% (14377/53248) Updating files: 28% (14910/53248) Updating files: 29% (15442/53248) Updating files: 30% (15975/53248) Updating files: 31% (16507/53248) Updating files: 32% (17040/53248) Updating files: 33% (17572/53248) Updating files: 34% (18105/53248) Updating files: 35% (18637/53248) Updating files: 36% (19170/53248) Updating files: 37% (19702/53248) Updating files: 38% (20235/53248) Updating files: 39% (20767/53248) Updating files: 40% (21300/53248) Updating files: 41% (21832/53248) Updating files: 42% (22365/53248) Updating files: 43% (22897/53248) Updating files: 44% (23430/53248) Updating files: 45% (23962/53248) Updating files: 46% (24495/53248) Updating files: 47% (25027/53248) Updating files: 48% (25560/53248) Updating files: 49% (26092/53248) Updating files: 50% (26624/53248) Updating files: 51% (27157/53248) Updating files: 52% (27689/53248) Updating files: 53% (28222/53248) Updating files: 54% (28754/53248) Updating files: 55% (29287/53248) Updating files: 56% (29819/53248) Updating files: 57% (30352/53248) Updating files: 58% (30884/53248) Updating files: 59% (31417/53248) Updating files: 60% (31949/53248) Updating files: 61% (32482/53248) Updating files: 62% (33014/53248) Updating files: 63% (33547/53248) Updating files: 64% (34079/53248) Updating files: 65% (34612/53248) Updating files: 66% (35144/53248) Updating files: 67% (35677/53248) Updating files: 68% (36209/53248) Updating files: 69% (36742/53248) Updating files: 70% (37274/53248) Updating files: 71% (37807/53248) Updating files: 72% (38339/53248) Updating files: 73% (38872/53248) Updating files: 74% (39404/53248) Updating files: 74% (39684/53248) Updating files: 75% (39936/53248) Updating files: 76% (40469/53248) Updating files: 77% (41001/53248) Updating files: 78% (41534/53248) Updating files: 79% (42066/53248) Updating files: 80% (42599/53248) Updating files: 81% (43131/53248) Updating files: 82% (43664/53248) Updating files: 83% (44196/53248) Updating files: 83% (44409/53248) Updating files: 84% (44729/53248) Updating files: 85% (45261/53248) Updating files: 86% (45794/53248) Updating files: 87% (46326/53248) Updating files: 88% (46859/53248) Updating files: 89% (47391/53248) Updating files: 90% (47924/53248) Updating files: 91% (48456/53248) Updating files: 92% (48989/53248) Updating files: 93% (49521/53248) Updating files: 94% (50054/53248) Updating files: 95% (50586/53248) Updating files: 96% (51119/53248) Updating files: 97% (51651/53248) Updating files: 97% (51720/53248) Updating files: 98% (52184/53248) Updating files: 99% (52716/53248) Updating files: 100% (53248/53248) Updating files: 100% (53248/53248), done. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt TestValidation avec la référence: 526d3d3d9c12625d7979fe657483bcf13d7619e2 HEAD is now at 526d3d3d9 BUG (IC): On remplace g++ => gpp dans le nom de répertoire... On nettoie le dépôt TestValidation: ----------------------------- ----------------------------- Traitements pour le dépot Validation On va clôner le dépôt Validation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone mefgit@cantal.giref.ulaval.ca:Validation Cloning into 'Validation'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt Validation avec la référence: e217b0fdb9d22cef7599a2e641ead8e037d773bb HEAD is now at e217b0f BUG (IC, !11): Erreurs liées à la syntaxe bash pour awk... On nettoie le dépôt Validation: ----------------------------- ----------------------------- Traitements pour le dépot InterfaceQtVTK On va clôner le dépôt InterfaceQtVTK avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone mefgit@cantal.giref.ulaval.ca:InterfaceQtVTK Cloning into 'InterfaceQtVTK'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt InterfaceQtVTK avec la référence: 09e72c0d88f379afc716b4b95200e972f2753916 HEAD is now at 09e72c0d BUG (IC, mefpp#7141, !51): Appele "cmake -Wno-dev" pour éviter un paquet de warnings inutils lors de la configuration pour VTK. On nettoie le dépôt InterfaceQtVTK: ----------------------------- ----------------------------- Traitements pour le dépot webMEF On va clôner le dépôt webMEF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone mefgit@cantal.giref.ulaval.ca:webMEF Cloning into 'webMEF'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt webMEF avec la référence: 06e3445d7f528d58ea800993af73e28a8529cece HEAD is now at 06e3445 BUG (maintenance, !9): revert du commit 8ae36d90cb1762d7954bb8578107d047e184d34d... On nettoie le dépôt webMEF: ----------------------------- ----------------------------- Traitements pour le dépot BIB On va clôner le dépôt BIB avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone bibgit@cantal.giref.ulaval.ca:BIB Cloning into 'BIB'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt BIB avec la référence: 58c16b3091aab91c5911f08c3b38f2deb6d22444 HEAD is now at 58c16b309 BUG (maintenance, !870): IWYU On nettoie le dépôt BIB: ----------------------------- ----------------------------- Traitements pour le dépot BIBTestValidation On va clôner le dépôt BIBTestValidation avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master commande git pour clône: git clone bibgit@cantal.giref.ulaval.ca:BIBTestValidation Cloning into 'BIBTestValidation'... Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Updating files: 5% (6846/128453) Updating files: 6% (7708/128453) Updating files: 7% (8992/128453) Updating files: 8% (10277/128453) Updating files: 8% (11053/128453) Updating files: 9% (11561/128453) Updating files: 10% (12846/128453) Updating files: 11% (14130/128453) Updating files: 12% (15415/128453) Updating files: 13% (16699/128453) Updating files: 14% (17984/128453) Updating files: 15% (19268/128453) Updating files: 16% (20553/128453) Updating files: 17% (21838/128453) Updating files: 18% (23122/128453) Updating files: 18% (23442/128453) Updating files: 19% (24407/128453) Updating files: 20% (25691/128453) Updating files: 21% (26976/128453) Updating files: 22% (28260/128453) Updating files: 22% (28687/128453) Updating files: 23% (29545/128453) Updating files: 24% (30829/128453) Updating files: 25% (32114/128453) Updating files: 26% (33398/128453) Updating files: 27% (34683/128453) Updating files: 27% (35185/128453) Updating files: 28% (35967/128453) Updating files: 28% (37140/128453) Updating files: 29% (37252/128453) Updating files: 29% (38060/128453) Updating files: 30% (38536/128453) Updating files: 31% (39821/128453) Updating files: 32% (41105/128453) Updating files: 33% (42390/128453) Updating files: 34% (43675/128453) Updating files: 34% (44567/128453) Updating files: 35% (44959/128453) Updating files: 36% (46244/128453) Updating files: 37% (47528/128453) Updating files: 37% (47808/128453) Updating files: 38% (48813/128453) Updating files: 39% (50097/128453) Updating files: 40% (51382/128453) Updating files: 40% (52110/128453) Updating files: 41% (52666/128453) Updating files: 42% (53951/128453) Updating files: 43% (55235/128453) Updating files: 43% (55852/128453) Updating files: 44% (56520/128453) Updating files: 45% (57804/128453) Updating files: 46% (59089/128453) Updating files: 47% (60373/128453) Updating files: 47% (60618/128453) Updating files: 48% (61658/128453) Updating files: 49% (62942/128453) Updating files: 49% (63934/128453) Updating files: 50% (64227/128453) Updating files: 51% (65512/128453) Updating files: 51% (66449/128453) Updating files: 52% (66796/128453) Updating files: 53% (68081/128453) Updating files: 54% (69365/128453) Updating files: 55% (70650/128453) Updating files: 56% (71934/128453) Updating files: 57% (73219/128453) Updating files: 57% (74409/128453) Updating files: 58% (74503/128453) Updating files: 59% (75788/128453) Updating files: 60% (77072/128453) Updating files: 61% (78357/128453) Updating files: 62% (79641/128453) Updating files: 62% (80314/128453) Updating files: 63% (80926/128453) Updating files: 63% (82165/128453) Updating files: 64% (82210/128453) Updating files: 65% (83495/128453) Updating files: 66% (84779/128453) Updating files: 67% (86064/128453) Updating files: 68% (87349/128453) Updating files: 69% (88633/128453) Updating files: 70% (89918/128453) Updating files: 71% (91202/128453) Updating files: 72% (92487/128453) Updating files: 72% (93147/128453) Updating files: 73% (93771/128453) Updating files: 74% (95056/128453) Updating files: 75% (96340/128453) Updating files: 76% (97625/128453) Updating files: 77% (98909/128453) Updating files: 78% (100194/128453) Updating files: 79% (101478/128453) Updating files: 80% (102763/128453) Updating files: 81% (104047/128453) Updating files: 81% (104170/128453) Updating files: 81% (104664/128453) Updating files: 81% (104739/128453) Updating files: 81% (104842/128453) Updating files: 81% (104918/128453) Updating files: 81% (105121/128453) Updating files: 82% (105332/128453) Updating files: 82% (105856/128453) Updating files: 83% (106616/128453) Updating files: 83% (107040/128453) Updating files: 84% (107901/128453) Updating files: 84% (108329/128453) Updating files: 85% (109186/128453) Updating files: 86% (110470/128453) Updating files: 87% (111755/128453) Updating files: 87% (111840/128453) Updating files: 88% (113039/128453) Updating files: 88% (114234/128453) Updating files: 89% (114324/128453) Updating files: 90% (115608/128453) Updating files: 90% (116413/128453) Updating files: 91% (116893/128453) Updating files: 91% (117593/128453) Updating files: 92% (118177/128453) Updating files: 92% (119174/128453) Updating files: 93% (119462/128453) Updating files: 94% (120746/128453) Updating files: 94% (121734/128453) Updating files: 95% (122031/128453) Updating files: 95% (122980/128453) Updating files: 96% (123315/128453) Updating files: 96% (123875/128453) Updating files: 96% (124043/128453) Updating files: 97% (124600/128453) Updating files: 97% (124917/128453) Updating files: 98% (125884/128453) Updating files: 99% (127169/128453) Updating files: 99% (127776/128453) Updating files: 100% (128453/128453) Updating files: 100% (128453/128453), done. Already on 'master' Your branch is up to date with 'origin/master'. On valide le dépôt BIBTestValidation avec la référence: 9fc640cc0ce99dc6d31cce4f3a6071f07f5563e2 HEAD is now at 9fc640cc0c AQL (maintenance): Ajustement epsilon pour icpc. On nettoie le dépôt BIBTestValidation: ----------------------------- Remarque : $prefix_script été vide, je le met à $prefix_compilation /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp ** Auto-vérification des scripts de lancement **, relance: 0 Le fichier des mails est /tmp/TV_2024.06.12.11h57m25s.Am6/courriels_personnes_toujours_averties_pour_les_changements_dans_les_compilations.txt Fonction envoieCourrielEtTermine appellée avec 0 Création du virtualenv python /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python Collecting virtualenv Obtaining dependency information for virtualenv from https://files.pythonhosted.org/packages/0a/02/085eee8570e807db9a1aa905e18c9123efec753ae9021b029115c6e0bb28/virtualenv-20.26.2-py3-none-any.whl.metadata Downloading virtualenv-20.26.2-py3-none-any.whl.metadata (4.4 kB) Collecting distlib<1,>=0.3.7 (from virtualenv) Obtaining dependency information for distlib<1,>=0.3.7 from https://files.pythonhosted.org/packages/8e/41/9307e4f5f9976bc8b7fea0b66367734e8faf3ec84bc0d412d8cfabbb66cd/distlib-0.3.8-py2.py3-none-any.whl.metadata Downloading distlib-0.3.8-py2.py3-none-any.whl.metadata (5.1 kB) Collecting filelock<4,>=3.12.2 (from virtualenv) Obtaining dependency information for filelock<4,>=3.12.2 from https://files.pythonhosted.org/packages/41/24/0b023b6537dfc9bae2c779353998e3e99ac7dfff4222fc6126650e93c3f3/filelock-3.14.0-py3-none-any.whl.metadata Downloading filelock-3.14.0-py3-none-any.whl.metadata (2.8 kB) Collecting platformdirs<5,>=3.9.1 (from virtualenv) Obtaining dependency information for platformdirs<5,>=3.9.1 from https://files.pythonhosted.org/packages/68/13/2aa1f0e1364feb2c9ef45302f387ac0bd81484e9c9a4c5688a322fbdfd08/platformdirs-4.2.2-py3-none-any.whl.metadata Downloading platformdirs-4.2.2-py3-none-any.whl.metadata (11 kB) Downloading virtualenv-20.26.2-py3-none-any.whl (3.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.9/3.9 MB 67.8 MB/s eta 0:00:00 Downloading distlib-0.3.8-py2.py3-none-any.whl (468 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 468.9/468.9 kB 104.3 MB/s eta 0:00:00 Downloading filelock-3.14.0-py3-none-any.whl (12 kB) Downloading platformdirs-4.2.2-py3-none-any.whl (18 kB) Installing collected packages: distlib, platformdirs, filelock, virtualenv Successfully installed distlib-0.3.8 filelock-3.14.0 platformdirs-4.2.2 virtualenv-20.26.2 created virtual environment CPython3.12.3.final.0-64 in 736ms creator CPython3Posix(dest=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, via=copy, app_data_dir=/users/cmpbib/.local/share/virtualenv) added seed packages: pip==24.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Requirement already satisfied: pip in ./virtual_env_python/lib/python3.12/site-packages (24.0) Collecting bokeh (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached bokeh-3.4.1-py3-none-any.whl.metadata (12 kB) Collecting CT3 (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 2)) Using cached CT3-3.3.3.post1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (3.4 kB) Collecting cheetah3 (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 3)) Using cached Cheetah3-3.2.6.post1-cp312-cp312-linux_x86_64.whl Collecting numpy (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 4)) Using cached numpy-1.26.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting pandas (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Collecting psutil (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 6)) Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) Collecting python-dateutil (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 7)) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting scipy (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 8)) Using cached scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Collecting six (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 9)) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting matplotlib (from -r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached matplotlib-3.9.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting Jinja2>=2.9 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting contourpy>=1.2 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached contourpy-1.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting packaging>=16.8 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) Collecting pillow>=7.1.0 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached pillow-10.3.0-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (9.2 kB) Collecting PyYAML>=3.10 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting tornado>=6.2 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting xyzservices>=2021.09.1 (from bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached xyzservices-2024.6.0-py3-none-any.whl.metadata (4.0 kB) Collecting pytz>=2020.1 (from pandas->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 5)) Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting cycler>=0.10 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached fonttools-4.53.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (162 kB) Collecting kiwisolver>=1.3.1 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached kiwisolver-1.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting pyparsing>=2.3.1 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached bokeh-3.4.1-py3-none-any.whl (7.0 MB) Using cached CT3-3.3.3.post1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.whl (860 kB) Using cached numpy-1.26.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.0 MB) Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.7 MB) Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.2 MB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached matplotlib-3.9.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) Using cached contourpy-1.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (309 kB) Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) Using cached fonttools-4.53.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) Using cached kiwisolver-1.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.5 MB) Using cached packaging-24.1-py3-none-any.whl (53 kB) Using cached pillow-10.3.0-cp312-cp312-manylinux_2_28_x86_64.whl (4.5 MB) Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) Using cached PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB) Using cached tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (436 kB) Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) Using cached xyzservices-2024.6.0-py3-none-any.whl (83 kB) Using cached MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (28 kB) Installing collected packages: pytz, xyzservices, tzdata, tornado, six, PyYAML, pyparsing, psutil, pillow, packaging, numpy, MarkupSafe, kiwisolver, fonttools, cycler, CT3, cheetah3, scipy, python-dateutil, Jinja2, contourpy, pandas, matplotlib, bokeh Successfully installed CT3-3.3.3.post1 Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 bokeh-3.4.1 cheetah3-3.2.6.post1 contourpy-1.2.1 cycler-0.12.1 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 numpy-1.26.4 packaging-24.1 pandas-2.2.2 pillow-10.3.0 psutil-5.9.8 pyparsing-3.1.2 python-dateutil-2.9.0.post0 pytz-2024.1 scipy-1.13.1 six-1.16.0 tornado-6.4.1 tzdata-2024.1 xyzservices-2024.6.0 Fin création du virtualenv Execution du hook de configuration /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/scripts/Petsc/compile-petsc-master.sh debug ============================================================================================= Mode: mode = debug Variables d'environnement utilisées: vpetsc = petsc-main prefix = /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug WGET = git petsc_GIT = petsc_SHA = MPIdir = /opt/mpi/openmpi-4.1.6-opt LibLAPACK = mkl MKLROOT = /opt/intel/oneapi/mkl/2024.1 LibLAPACK_DIR = AvecIndices64bit = 0 WITH_XXX_COMPILERS = OPTFLAGS = copie_configure_log = /users/cmpgiref/public_html/petsc-main-debug ============================================================================================= Assurez-vous d'avoir installé la MKL avec l'option 'cluster'. On a détecté que la librairie MPI est: 'OPENMPI'. OPTIONS_COPTFLAGS= git clone --depth 100 https://gitlab.com/petsc/petsc.git -b main petsc-main-debug Cloning into 'petsc-main-debug'... SHA GIT courant: commit a623e290c7eaa252b385564179837fe27521fbac Merge: b2e8165f 5d83a8b1 Author: Satish Balay Date: Wed Jun 12 03:37:04 2024 +0000 Merge branch 'barry/2024-05-29/minor-fortran-stub-cleanup' into 'main' More improvements to Fortran stubs and interfaces See merge request petsc/petsc!7598 ============================================================================================= Voici la commande de configuration: ./configure --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib=-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 ============================================================================================= ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-party.git for PARTY ============================================================================================= ============================================================================================= Compiling party; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/hdf5-1.14.3-p1.tar.bz2 for HDF5 ============================================================================================= ============================================================================================= Running configure on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/Kitware/CMake/releases/download/v3.29.3/cmake-3.29.3.tar.gz for CMAKE ============================================================================================= ============================================================================================= Running configure on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-metis.git for METIS ============================================================================================= ============================================================================================= Configuring METIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS ============================================================================================= ============================================================================================= Configuring PARMETIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH ============================================================================================= ============================================================================================= Compiling PTScotch; this may take several minutes ============================================================================================= ============================================================================================= Installing PTScotch; this may take several minutes ============================================================================================= ============================================================================================= BLASLAPACK: Looking for multi-threaded MKL for C/Pardiso ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/spai-3.0-p1.tar.gz for SPAI ============================================================================================= ============================================================================================= Configuring, compiling and installing Spai; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use ml at https://trilinos.github.io ************************************************************************************************** ============================================================================================= Trying to download https://gitlab.com/petsc/pkg-trilinos-ml for ML ============================================================================================= ============================================================================================= Configuring ML with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing ML; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu_dist for SUPERLU_DIST ============================================================================================= ============================================================================================= Configuring SUPERLU_DIST with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU_DIST; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu for SUPERLU ============================================================================================= ============================================================================================= Configuring SUPERLU with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/pghysels/STRUMPACK for STRUMPACK ============================================================================================= ============================================================================================= Configuring STRUMPACK with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing STRUMPACK; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use MUMPS at https://mumps-solver.org/index.php?page=dwnld#form ************************************************************************************************** ============================================================================================= Trying to download https://mumps-solver.org/MUMPS_5.7.1.tar.gz for MUMPS ============================================================================================= ============================================================================================= Compiling MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Installing MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/DrTimothyAldenDavis/SuiteSparse for SUITESPARSE ============================================================================================= ============================================================================================= Configuring SUITESPARSE with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUITESPARSE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/hypre-space/hypre for HYPRE ============================================================================================= ============================================================================================= Running configure on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.com/slepc/slepc.git for SLEPC ============================================================================================= ============================================================================================= SLEPc examples are available at arch-linux-c-debug/externalpackages/git.slepc export SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug ============================================================================================= ============================================================================================= Trying to download https://github.com/hpddm/hpddm for HPDDM ============================================================================================= ============================================================================================= Copying HPDDM; this may take several seconds ============================================================================================= ********************************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------------- Incorrect option --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug specified. It cannot be same as PETSC_DIR! ********************************************************************************************* Erreur à la configuration de PETSC! cp: cannot stat 'make.log': No such file or directory cp: cannot stat '*/externalpackages/git.slepc/make.log': No such file or directory cp: cannot stat '*/externalpackages/git.slepc/configure.log': No such file or directory