================================================================================
Starting Configure Run at Tue Jul 16 00:10:56 2024
Configure Options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
Working directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc
Python version:
3.12.3 (main, Apr 17 2024, 00:00:00) [GCC 13.2.1 20240316 (Red Hat 13.2.1-7)]
make: /usr/bin/gmake
PETSc source directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
PETSc install directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
PETSc version: 3.21.99
SLEPc source directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc
SLEPc install directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
SLEPc version: 3.21.99
Checking configure hashfile
No previous hashfile found
================================================================================
Checking PETSc installation...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

#include "petscsnes.h"
int main() {
PetscErrorCode ierr; Vec v; Mat m; KSP k;
ierr = PetscInitializeNoArguments();
ierr = VecCreate(PETSC_COMM_WORLD,&v);
ierr = MatCreate(PETSC_COMM_WORLD,&m);
ierr = KSPCreate(PETSC_COMM_WORLD,&k);
(void)ierr;
return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-cz1xfnc_;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
================================================================================
Checking LAPACK library...
=== Checking all LAPACK functions...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

extern void dlaev2_();
extern void dgehrd_();
extern void dlanhs_();
extern void dtrexc_();
extern void dtrevc_();
extern void dtgexc_();
extern void dtgevc_();
extern void dstedc_();
extern void dhsein_();
extern void dlarfg_();
extern void dlarf_();
extern void dlascl_();
extern void dtrsyl_();
extern void dorghr_();
extern void dsytrd_();
extern void dorgtr_();
extern void dstevr_();
extern void dbdsdc_();
extern void dlag2_();
extern void dlasv2_();
extern void dlartg_();
extern void dlaed4_();
extern void dlamrg_();
int main() {
dlaev2_();
dgehrd_();
dlanhs_();
dtrexc_();
dtrevc_();
dtgexc_();
dtgevc_();
dstedc_();
dhsein_();
dlarfg_();
dlarf_();
dlascl_();
dtrsyl_();
dorghr_();
dsytrd_();
dorgtr_();
dstevr_();
dbdsdc_();
dlag2_();
dlasv2_();
dlartg_();
dlaed4_();
dlamrg_();
return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-e2e6_pfj;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
=== Checking LAPACK dggsvd3 function...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

extern void dggsvd3_();
int main() {
dggsvd3_();
return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-62sua8t_;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
=== Checking LAPACK dggev3 function...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

extern void dggev3_();
int main() {
dggev3_();
return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-cd3wz4n5;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
=== Checking LAPACK dgges3 function...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

extern void dgges3_();
int main() {
dgges3_();
return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-vmoregga;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
================================================================================
Checking FEAST...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Checking link with code:

#include <mkl.h>
int main() {
  double epsout=0.0,*evals=NULL,*errest=NULL,inta,intb;
  MKL_Complex16 Ze,*work2=NULL;
  double *Aq=NULL,*Bq=NULL,*pV=NULL,*work1=NULL;
  MKL_INT fpm[128],ijob,n,loop,ncv,nconv,info;
  feastinit(fpm);
  dfeast_srci(&ijob,&n,&Ze,work1,work2,Aq,Bq,fpm,&epsout,&loop,&inta,&intb,&ncv,evals,pV,&nconv,errest,&info);
  return 0;
}

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-_b7w2bw6;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
================================================================================
Checking SCALAPACK...
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Running command:
cd /tmp/TV_2024.07.16.00h00m02s.Jih/slepc-395xcehm;/usr/bin/gmake checklink LINKFLAGS=""
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Output:
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 

====== With underscore Fortran names
#include "petscsnes.h"
PETSC_EXTERN int
pdsyev_();
PETSC_EXTERN int
pdsygvx_();
PETSC_EXTERN int
pdgesvd_();
int main() {
PetscErrorCode ierr; Vec v; Mat m; KSP k;
ierr = PetscInitializeNoArguments();
ierr = VecCreate(PETSC_COMM_WORLD,&v);
ierr = MatCreate(PETSC_COMM_WORLD,&m);
ierr = KSPCreate(PETSC_COMM_WORLD,&k);
(void)ierr;
pdsyev_();
pdsygvx_();
pdgesvd_();
return 0;
}
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include    checklink.c
/opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0  -o checklink checklink.o  -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lsuperlu_dist -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -lquadmath
================================================================================
Writing various configuration files...
Modules file in /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib/slepc/conf/modules/slepc
pkg-config file in /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib/pkgconfig
Deleting configure hash file: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib/slepc/conf/configure-hash
Unable to delete configure hash file: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib/slepc/conf/configure-hash
================================================================================


================================================================================
SLEPc Configuration
================================================================================

SLEPc directory:
  /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc
  It is a git repository on branch: main^2
SLEPc prefix directory:
  /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
PETSc directory:
  /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug
  It is a git repository on branch: main
Prefix install with double precision real numbers
FEAST from MKL linked by PETSc
SCALAPACK from SCALAPACK linked by PETSc

Finishing Configure Run at Tue Jul 16 00:11:00 2024
================================================================================