*** Using PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_ARCH=arch-linux-c-debug *** *** Installing PETSc at prefix location: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH="" check ==================================== /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_INSTALL=install install-builtafterpetsc /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_INSTALL=install petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install *** Building petsc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_src fetching build requirement 'Cython >= 3.0.0' using Cython 3.0.11 cythonizing 'petsc4py/PETSc.pyx' -> 'petsc4py/PETSc.c' running build_py creating build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/typing.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py creating build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib creating build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes copying src/petsc4py/lib/_pytypes/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes creating build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/py.typed -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc_api.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.h -> build/lib.linux-x86_64-cpython-312/petsc4py creating build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/numpy.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pybuffer.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pyscalar.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/petsc.cfg -> build/lib.linux-x86_64-cpython-312/petsc4py/lib running build_ext PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.1 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc building 'PETSc' extension creating build/temp.linux-x86_64-cpython-312/src/petsc4py /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -fPIC -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc -Isrc/petsc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib64/python3.12/site-packages/numpy/core/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/include -I/usr/include/python3.12 -c src/petsc4py/PETSc.c -o build/temp.linux-x86_64-cpython-312/src/petsc4py/PETSc.o /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -shared -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection build/temp.linux-x86_64-cpython-312/src/petsc4py/PETSc.o -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/usr/lib64 -Wl,--enable-new-dtags,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lpetsc -o build/lib.linux-x86_64-cpython-312/petsc4py/lib/PETSc.cpython-312-x86_64-linux-gnu.so writing build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg *** Installing petsc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install running build running build_src running build_py copying src/petsc4py/typing.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/_pytypes/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes copying src/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/py.typed -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc_api.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/include/petsc4py/numpy.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pybuffer.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pyscalar.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib running build_ext PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.1 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc writing build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg running install_lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/typing.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc_api.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__main__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/py.typed -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__init__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/__init__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/PETSc.cpython-312-x86_64-linux-gnu.so -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/numpy.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/pybuffer.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/petsc4py.i -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/pyscalar.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/petsc4py.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.pxd -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__main__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/typing.py to typing.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/__main__.py to __main__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer/petscpyvista.py to petscpyvista.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/PETSc.py to PETSc.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/petsc4py.egg-info writing src/petsc4py.egg-info/PKG-INFO writing dependency_links to src/petsc4py.egg-info/dependency_links.txt writing requirements to src/petsc4py.egg-info/requires.txt writing top-level names to src/petsc4py.egg-info/top_level.txt writing manifest file 'src/petsc4py.egg-info/SOURCES.txt' dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdualspace.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmswarm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmstag.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ptscotch.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/interpreter.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_viz_opendx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdraw.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/gpu_api_utils.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5VLnative.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_lapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_MultiVector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmcomposite.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/smumps_struc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5pubconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_LoadBalanceInverseOperator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/superlu_upacked.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_check.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_ElementByElement_SingleElement.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5PLpublic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_comminfoagx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_RowMatrix.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDioc.h won't be automatically included in the manifest: the path must 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/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/hdf5.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDdevelop.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_cg.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscpctypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_BaseOperator.h won't be automatically included in the manifest: the path must be 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the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_operator_blockmat.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/HYPRE_MatvecFunctions.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsccharacteristic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5Opublic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/dcomplex.h 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/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dtimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewerexodusiiimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscdsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmadaptorimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscfptimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashijkkey.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapijv.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscfeimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/deviceimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/drawimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petschpddm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapi.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbjkokkosimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmpleximpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapobj.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/bmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmlabelimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/veccupmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmstagimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/partitionerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashijklkey.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmswarmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/loghandlerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/sfimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewerhdf5impl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapijkl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/randomimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matorderimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashset.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/snesimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/tshistoryimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcstructsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matdensecupmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/kspimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/logimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/glvisvecimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmpatchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/garbagecollector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/sectionimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/logimpldeprecated.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscadvancedmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/isimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapiv.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmproductimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmap.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/glvisviewerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcgamgimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmplextransformimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/vieweradiosimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petschypre.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcmgimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashsetij.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/fortranimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcisimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscfvimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/linesearchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapijk.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/taolinesearchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/vecimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmnetworkimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcpatchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/taoimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmdaimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmforestimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/mempoison.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewercgnsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashtable.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmfieldimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/tsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/f90impl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcprivateimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmmbimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/characteristicimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscconvestimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapij.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscconf.h won't be automatically included in the manifest: the path must be relative reading manifest file 'src/petsc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.rst' writing manifest file 'src/petsc4py.egg-info/SOURCES.txt' Copying src/petsc4py.egg-info to /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py-3.23.0.dev0-py3.12.egg-info running install_scripts ===================================== To use petsc4py, add /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib to PYTHONPATH ===================================== gmake[3]: Nothing to be done for 'libmesh-install'. gmake[3]: Nothing to be done for 'mfem-install'. *** Building SLEPc *** Checking environment... done Checking PETSc installation... done Processing slepc4py... done Checking LAPACK library... done Checking FEAST... done Checking SCALAPACK... done Writing various configuration files... done ================================================================================ SLEPc Configuration ================================================================================ SLEPc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc It is a git repository on branch: main~4^2 SLEPc prefix directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug Prefix install with double precision real numbers Python bindings (slepc4py) will be built after SLEPc FEAST from MKL linked by PETSc SCALAPACK from SCALAPACK linked by PETSc xxx==========================================================================xxx Configure stage complete. Now build the SLEPc library with: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug xxx==========================================================================xxx gmake[6]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' ========================================== Starting make run on dms12 at Tue, 05 Nov 2024 18:34:12 -0500 Machine characteristics: Linux dms12 6.8.0-48-generic #48-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 27 14:04:52 UTC 2024 x86_64 GNU/Linux ----------------------------------------- Using SLEPc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc Using PETSc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug Using PETSc arch: installed-arch-linux2-c-debug ----------------------------------------- SLEPC_VERSION_RELEASE 0 SLEPC_VERSION_MAJOR 3 SLEPC_VERSION_MINOR 22 SLEPC_VERSION_SUBMINOR 0 SLEPC_VERSION_DATE "unknown" SLEPC_VERSION_GIT "unknown" SLEPC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using SLEPc configure options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-slepc4py=1 Using SLEPc configuration flags: #define SLEPC_PETSC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug" #define SLEPC_PETSC_ARCH "" #define SLEPC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc" #define SLEPC_LIB_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define SLEPC_VERSION_GIT "v3.22.0-3-g93751d746" #define SLEPC_VERSION_DATE_GIT "2024-10-02 12:08:41 +0200" #define SLEPC_VERSION_BRANCH_GIT "main~4^2" #define SLEPC_HAVE_SLEPC4PY 1 #define SLEPC4PY_INSTALL_PATH /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib #define SLEPC_HAVE_FEAST 1 #define SLEPC_HAVE_SCALAPACK 1 #define SLEPC_SCALAPACK_HAVE_UNDERSCORE 1 #define SLEPC_HAVE_PACKAGES ":feast:scalapack:" ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 22 PETSC_VERSION_SUBMINOR 1 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using PETSc configure options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-petsc4py=yes --with-slepc4py=yes --with-python-exec=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 --have-numpy=yes --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib="-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_rt" Using PETSc configuration flags: #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CMAKE 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_CXX_DIALECT_CXX20 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MKL_CPARDISO 1 #define PETSC_HAVE_MKL_INCLUDES 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_PARDISO 1 #define PETSC_HAVE_MKL_SET_NUM_THREADS 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_ML 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_COUNT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_NO_FINITE_MATH_ONLY 1 #define PETSC_HAVE_OPENMPI 1 #define PETSC_HAVE_PACKAGES ":amd:blaslapack:cholmod:cmake:hdf5:hpddm:hypre:klu:mathlib:metis:mkl_cpardiso:mkl_pardiso:mkl_sparse:mkl_sparse_optimize:ml:mpi:mumps:parmetis:party:pthread:ptscotch:regex:scalapack:spai:spqr:strumpack:superlu:superlu_dist:umfpack:x11:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARTY 1 #define PETSC_HAVE_PETSC4PY 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_MUTEX 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_DEFAULT 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SHMGET 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SPAI 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_STRUMPACK 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SUPERLU_DIST 1 #define PETSC_HAVE_SUPERLU_DIST_SINGLE 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 64 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/usr/bin/gmake --no-print-directory" #define PETSC_PETSC4PY_INSTALL_PATH "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2024-11-04 18:19:06 +0000" #define PETSC_VERSION_GIT "v3.22.1-116-g12277a38" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C/C++ include paths: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include Using C compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o .o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 mpicc -show: gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using C++ compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpicxx -show: g++ -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using Fortran include/module paths: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include Using Fortran compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 -o .o -c -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpif90 -show: gfortran -I/opt/mpi/openmpi-4.1.6-opt/include -I/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Fortran compiler version: GNU Fortran (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) ----------------------------------------- Using C/C++ linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Using Fortran linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 Using Fortran flags: -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -lslepc ------------------------------------------ Using mpiexec: /opt/mpi/openmpi-4.1.6-opt/bin/mpiexec --oversubscribe ------------------------------------------ Using MAKE: /usr/bin/gmake Default MAKEFLAGS: MAKE_NP:12 MAKE_LOAD:36.0 MAKEFLAGS: -j24 --jobserver-auth=fifo:/tmp/GMfifo1423005 --no-print-directory -- PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=installed-arch-linux2-c-debug PETSC_INSTALL=install SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc ========================================== /usr/bin/gmake --print-directory -f gmakefile -l36.0 --output-sync=recurse V= slepc_libs gmake[7]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/share/petsc/examples/config/gmakegen.py --petsc-arch= --pkg-dir=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc --pkg-name=slepc --pkg-pkgs=sys,eps,svd,pep,nep,mfn,lme --pkg-arch=installed-arch-linux2-c-debug CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/dsutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/hz.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dibtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghep/dsghep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbiorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvkrylov.o Use "/usr/bin/gmake V=1" to see verbose compile lines, "/usr/bin/gmake V=0" to suppress. CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/contiguous/contig.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dlaed3m.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvblas.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/mat/bvmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/vecs/vecs.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/svec/svec.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dmerg2.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsbtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/invit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsrtdf.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvfunc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gsvd/dsgsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gnhep/dsgnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvlapack.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/tensor/bvtensor.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/dsghiep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvcontour.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/combine/fncombine.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/invsqrt/fninvsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/phi/fnphi.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhep/dsnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhepts/dsnhepts.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvglobal.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/pep/dspep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/dshep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hsvd/dshsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dspriv.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/fnutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/log/fnlog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/rational/fnrational.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/sqrt/fnsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ellipse/rgellipse.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/svd/dssvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nep/dsnep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/polygon/rgpolygon.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/interval/rginterval.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shift/shift.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/cayley/cayley.o CC installed-arch-linux2-c-debug/obj/src/sys/finit.o CC installed-arch-linux2-c-debug/obj/src/sys/dlregisslepc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shell/shell.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/precond/precond.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/sinvert/sinvert.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stshellmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ring/rgring.o CC installed-arch-linux2-c-debug/obj/src/sys/mat/matstruct.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/exp/fnexp.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filtlan.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filter.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stset.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/slepccontour.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/pool.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcsc.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcutil.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcinit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsles.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdinitv.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdtestconv.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdschm.o CC installed-arch-linux2-c-debug/obj/src/sys/mat/matutil.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdgd2.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsolve.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/vecutil.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/davidson.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/rqcg/rqcg.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdutils.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdupdatev.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stfunc.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/scalapack/scalapack.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/arnoldi/arnoldi.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-indef.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/epskrylov.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdcalcpairs.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/lobpcg/lobpcg.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lapack/lapack.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/dlregiseps.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-twosided.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/gd/gd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdimprovex.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/subspace/subspace.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/jd/jd.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsregis.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/lanczos/lanczos.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsdefault.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/veccomp.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsmon.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/external/scalapack/svdscalap.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lyapii/lyapii.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsbasic.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/randomized/rsvd.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/dlregissvd.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lapack/svdlapack.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-bse.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssetup.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lanczos/gklanczos.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/ciss/ciss.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svddefault.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/feast/feast.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdregis.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdbasic.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsview.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cross/cross.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/power/power.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdmon.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssolve.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-slice.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/dlregispep.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/pepkrylov.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/peputils.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/krylovschur.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/qeplin.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsetup.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsolve.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsopts.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdview.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cyclic/cyclic.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/qarnoldi/qarnoldi.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdopts.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepregis.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepmon.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepdefault.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepbasic.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/ptoar.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsetup.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/dlregisnep.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/interpol/interpol.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/narnoldi/narnoldi.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/peprefine.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepdefault.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/linear.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs-fullb.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/qslice.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/stoar.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepview.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp-twosided.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepregis.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepmon.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/rii/rii.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepresolv.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/dlregismfn.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/krylov/mfnkrylov.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/expokit/mfnexpokit.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnregis.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsetup.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnmon.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/trlanczos/trlanczos.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsetup.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/nrefine.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepopts.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsolve.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/dlregislme.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nepdefl.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnbasic.o CC installed-arch-linux2-c-debug/obj/src/lme/impls/krylov/lmekrylov.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeregis.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/neprefine.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnopts.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmemon.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepbasic.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmebasic.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesetup.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepview.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/jd/pjd.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeopts.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesolve.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepopts.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmedense.o CLINKER installed-arch-linux2-c-debug/lib/libslepc.so.3.022.0 gmake[7]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' gmake[6]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' Now to install the library do: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug install ========================================= *** Installing SLEPc *** *** Installing SLEPc at prefix location: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH="" check ==================================== /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc install-builtafterslepc /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc slepc4py-install *** Building slepc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_src fetching build requirement 'Cython >= 3.0.0' using Cython 3.0.11 cythonizing 'slepc4py/SLEPc.pyx' -> 'slepc4py/SLEPc.c' running build_py creating build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py creating build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/SLEPc.pxd -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc_api.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.h -> build/lib.linux-x86_64-cpython-312/slepc4py creating build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.h -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.i -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/lib/slepc.cfg -> build/lib.linux-x86_64-cpython-312/slepc4py/lib running build_ext SLEPC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug version: 3.22.0 development PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.1 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc building 'SLEPc' extension creating build/temp.linux-x86_64-cpython-312/src/slepc4py /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -fPIC -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc -Isrc/slepc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib64/python3.12/site-packages/numpy/core/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/include -I/usr/include/python3.12 -c src/slepc4py/SLEPc.c -o build/temp.linux-x86_64-cpython-312/src/slepc4py/SLEPc.o /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -shared -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection build/temp.linux-x86_64-cpython-312/src/slepc4py/SLEPc.o -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/usr/lib64 -Wl,--enable-new-dtags,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lslepc -lpetsc -o build/lib.linux-x86_64-cpython-312/slepc4py/lib/SLEPc.cpython-312-x86_64-linux-gnu.so writing build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg *** Installing slepc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install running build running build_src running build_py copying src/slepc4py/SLEPc.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/SLEPc.pxd -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc_api.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.h -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.i -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py running build_ext SLEPC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug version: 3.22.0 development PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.1 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc writing build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg running install_lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc_api.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.pxd -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/__main__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/SLEPc.cpython-312-x86_64-linux-gnu.so -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py/slepc4py.i -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py/slepc4py.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/SLEPc.py to SLEPc.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/__main__.py to __main__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/slepc4py.egg-info writing src/slepc4py.egg-info/PKG-INFO writing dependency_links to src/slepc4py.egg-info/dependency_links.txt writing requirements to src/slepc4py.egg-info/requires.txt writing top-level names to src/slepc4py.egg-info/top_level.txt writing manifest file 'src/slepc4py.egg-info/SOURCES.txt' dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdualspace.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmswarm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmstag.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ptscotch.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/interpreter.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_viz_opendx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdraw.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcblaslapack_mangle.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/gpu_api_utils.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5VLnative.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_lapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_MultiVector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmcomposite.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/smumps_struc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepccupmblas.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5pubconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_LoadBalanceInverseOperator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/superlu_upacked.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_check.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_ElementByElement_SingleElement.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5PLpublic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_comminfoagx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_RowMatrix.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDioc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsctao_deprecations.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/mmio.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_operator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/machines.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_ParMETIS.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcmat.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_pde.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_Krylov.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_FilterType.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5overflow.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/HYPRE_struct_ls.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_genP.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnestypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsftypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/hdf5.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDdevelop.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_cg.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscpctypes.h won't be automatically included in the manifest: the path must be relative dependency 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/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_RefMaxwell.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_METIS.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/HYPRE_DistributedMatrixPilutSolver_protos.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_ifpack_epetra_wrap.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_setup.h won't be 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/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/stimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/slepcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/slepcscalapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/fnimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcconf.h won't be automatically included in the manifest: the path must be relative reading manifest file 'src/slepc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.rst' writing manifest file 'src/slepc4py.egg-info/SOURCES.txt' Copying src/slepc4py.egg-info to /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py-3.23.0.dev0-py3.12.egg-info running install_scripts ===================================== To use slepc4py, add /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib to PYTHONPATH ===================================== *** Building and installing HPDDM *** gmake[3]: Nothing to be done for 'amrex-install'. gmake[3]: Nothing to be done for 'bamg-install'.