====================== Début: 2024.12.07 18h16m01s ====================== nettoyage: 1er find: nettoyage: 2e find: ================================= Informations sur l'environnement: ================================= ulimit -a: real-time non-blocking time (microseconds, -R) unlimited core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 773215 max locked memory (kbytes, -l) 24751964 max memory size (kbytes, -m) unlimited open files (-n) 8096 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) unlimited cpu time (seconds, -t) unlimited max user processes (-u) 773215 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited hostname -I: 10.1.1.16 169.254.95.120 uname -a: Linux dms12 6.8.0-49-generic #49-Ubuntu SMP PREEMPT_DYNAMIC Mon Nov 4 02:06:24 UTC 2024 x86_64 GNU/Linux ================================= Les arguments passés à ce script: La variable PATH contient: /opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/usr/sbin:/cluster/logiciels/bin La variable LD_LIBRARY_PATH contient: /pmi/Indus/MichelinLibs_2023_10_30/intel/oneapi/2022.2/lib/intel64/:/opt/intel/oneapi/mkl/2024.1/lib:/opt/mpi/openmpi-4.1.6-opt/lib: La variable BASH contient: /usr/bin/bash ====================== env donne: APPIMAGE_EXTRACT_AND_RUN=1 autocopie=1 autre_message_dans_bilan=Voici les logs de Petsc:\nSHA du dépôt (si applicable): ${GIT_COMMIT_PETSC}\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_install.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_RDict.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_test.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_petsc_make_streams.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_configure.log\n - http://www.giref.ulaval.ca/~cmpgiref/petsc-main-debug/${fichier_history}_slepc_make.log\n\n autres_options_make=--output-sync=line baspage_html=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/baspage_compilation BCS_FILELOG_NAME=stdout BIB_GEOGEC_FORMAT=HDF BIB_RSTDLR_FORMAT=HDF branche_orig=master CCACHE_COMMENTS=yes CCACHE_DIR=/pmi/cmpbib/.ccache CCACHE_HARDLINK=1 CCACHE_SLOPPINESS=include_file_mtime cheminConf=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/BIBTestValidation/Scripts/CompilAuto/parametres_giref_avec_bib.json CMAKE_PREFIX_PATH=/opt/intel/oneapi/mkl/2024.1/lib/cmake: 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nom_image=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/fedora-devel-39_cc-natif_openmpi-4.1.6-opt_mkl-2024.1_no-petsc_cc-natif_qt-paquet_vtk_giref-singularity_complete.sif NO_TV= OMPI_MCA_btl_base_warn_component_unused=0 OMPI_MCA_btl_vader_single_copy_mechanism=none OMPI_MCA_fs_ufs_lock_algorithm=1 OMPI_MCA_hwloc_base_binding_policy=none OMPI_MCA_mpi_yield_when_idle=1 OPENBLAS_NUM_THREADS=1 OS=singularity Fedora release 39 (Thirty Nine) PATH=/opt/intel/oneapi/mkl/2024.1/bin/:/opt/mpi/openmpi-4.1.6-opt/bin:/usr/local/bin:/usr/bin:/usr/sbin:/cluster/logiciels/bin path_web=/pmi/cmpbib/compilations/MEFPP_IC_docker/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp pDepots_modes=declare -A depots_modes=([webMEF]="opt" ) pDepots_ref=declare -A depots_ref=([webMEF]="24854bd8ef580ed05c9935a94df008bde207a477" [GIREF]="18ae756f6383e99d1298047fe08c2dddef84726f" [Validation]="0b71b7ea7302a407d54a3a68d727a4e4ce9f8193" 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root 20 0 12004 6144 5184 S 0.0 0.0 0:00.98 smartd 1049 root 20 0 2613556 47808 34752 S 0.0 0.0 12:46.29 contain+ 1053 103 20 0 233864 6528 4608 S 0.0 0.0 0:08.14 rsyslogd 1096 root 20 0 318356 11904 10176 S 0.0 0.0 0:09.57 ModemMa+ 1182 root 20 0 27220 8640 7680 S 0.0 0.0 5:01.56 systemd+ 1202 root 20 0 114712 23040 13632 S 0.0 0.0 0:00.13 unatten+ 1404 root 20 0 13424 3648 3456 S 0.0 0.0 0:03.26 cron 1412 bin 20 0 3780 2304 2304 S 0.0 0.0 0:00.05 atd 1414 root 20 0 50316 14784 14016 S 0.0 0.0 0:03.94 systemd+ 1422 root 20 0 3104 2112 2112 S 0.0 0.0 0:00.29 rpc.idm+ 1437 root 20 0 11168 1728 1728 S 0.0 0.0 0:00.11 agetty 1438 111 20 0 4616 1756 1536 S 0.0 0.0 0:00.00 rpc.sta+ 1441 root 20 0 64844 5448 3648 S 0.0 0.0 0:01.95 rpc.mou+ 1457 root 20 0 0 0 0 I 0.0 0.0 0:00.00 lockd 1472 root 20 0 0 0 0 I 0.0 0.0 0:00.00 nfsd 1473 root 20 0 0 0 0 I 0.0 0.0 0:00.00 nfsd 1474 root 20 0 0 0 0 I 0.0 0.0 0:00.00 nfsd 1475 root 20 0 0 0 0 I 0.0 0.0 0:00.00 nfsd 1476 root 20 0 0 0 0 I 0.0 0.0 0:01.81 nfsd 1477 root 20 0 0 0 0 I 0.0 0.0 0:00.26 nfsd 1478 root 20 0 0 0 0 I 0.0 0.0 0:02.32 nfsd 1479 root 20 0 0 0 0 I 0.0 0.0 0:02.47 nfsd 1677 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 1685 116 39 19 60720 12740 1728 S 0.0 0.0 1:31.34 spawn-p+ 1710 root 20 0 0 0 0 I 0.0 0.0 2:08.89 NFSv4 c+ 2013 116 39 19 1333520 105516 55680 S 0.0 0.1 67:53.65 go.d.pl+ 2018 116 39 19 118096 12824 5184 S 0.0 0.0 12,48 apps.pl+ 2023 root 39 19 1378040 91632 5376 S 0.0 0.0 32:36.73 ebpf.pl+ 2025 116 39 19 202572 8612 7652 S 0.0 0.0 14:52.40 sd-jrnl+ 2034 116 39 19 128312 4800 4224 S 0.0 0.0 7:03.91 NETWORK+ 2048 116 39 19 13600 2036 1344 S 0.0 0.0 1:31.77 spawn-s+ 2441 root 20 0 12020 7872 6912 S 0.0 0.0 0:03.93 sshd 4008 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 4012 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 4013 root 0 -20 0 0 0 I 0.0 0.0 0:00.01 kworker+ 4014 root 20 0 0 0 0 S 0.0 0.0 4:20.69 dmcrypt+ 4032 root 20 0 0 0 0 S 0.0 0.0 0:48.31 jbd2/dm+ 4033 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 4047 root 20 0 36404 12096 9984 S 0.0 0.0 0:04.18 sssd 4050 root 20 0 44336 19996 14044 S 0.0 0.0 0:40.78 sssd_be 4051 root 20 0 70028 48192 46272 S 0.0 0.0 0:19.27 sssd_nss 4052 root 20 0 37908 14784 12672 S 0.0 0.0 2:21.49 sssd_pam 4053 root 20 0 35500 11520 9984 S 0.0 0.0 0:11.34 sssd_au+ 4061 root 20 0 470916 11636 9024 S 0.0 0.0 0:02.91 automou+ 7566 root 0 -20 0 0 0 I 0.0 0.0 0:00.00 kworker+ 2692482 root 20 0 0 0 0 I 0.0 0.0 0:03.07 kworker+ 2773686 root 20 0 0 0 0 I 0.0 0.0 0:03.77 kworker+ 2792236 root 20 0 0 0 0 I 0.0 0.0 0:02.21 kworker+ 2858955 root 20 0 0 0 0 I 0.0 0.0 0:01.93 kworker+ 3519480 root -2 0 0 0 0 S 0.0 0.0 0:00.00 psimon 3763787 root 20 0 0 0 0 I 0.0 0.0 2:55.60 kworker+ 3821411 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3832763 root 20 0 0 0 0 I 0.0 0.0 0:01.06 kworker+ 3894230 root 20 0 0 0 0 I 0.0 0.0 0:00.52 kworker+ 3897717 root 20 0 0 0 0 I 0.0 0.0 0:00.40 kworker+ 3902057 root 20 0 0 0 0 I 0.0 0.0 0:01.60 kworker+ 3902872 root 20 0 0 0 0 I 0.0 0.0 0:01.02 kworker+ 3906377 root 20 0 0 0 0 I 0.0 0.0 0:00.16 kworker+ 3908536 root 20 0 0 0 0 I 0.0 0.0 0:00.52 kworker+ 3909859 root 20 0 0 0 0 I 0.0 0.0 0:00.31 kworker+ 3909909 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3910158 root 20 0 0 0 0 I 0.0 0.0 0:00.42 kworker+ 3911091 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3912200 root 20 0 0 0 0 I 0.0 0.0 0:01.71 kworker+ 3913336 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3916863 root 20 0 0 0 0 I 0.0 0.0 0:00.46 kworker+ 3917122 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3918015 root 20 0 0 0 0 I 0.0 0.0 0:00.34 kworker+ 3920534 root 20 0 0 0 0 I 0.0 0.0 0:00.40 kworker+ 3922257 root 20 0 0 0 0 I 0.0 0.0 0:00.26 kworker+ 3922675 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3922725 root 20 0 0 0 0 I 0.0 0.0 0:00.07 kworker+ 3923068 root 20 0 0 0 0 I 0.0 0.0 0:00.06 kworker+ 3923418 root 20 0 0 0 0 I 0.0 0.0 0:00.40 kworker+ 3928121 root 20 0 0 0 0 I 0.0 0.0 0:00.22 kworker+ 3929712 root 20 0 0 0 0 I 0.0 0.0 0:00.18 kworker+ 3930560 116 39 19 13432 4800 4224 S 0.0 0.0 0:00.74 debugfs+ 3930611 root 39 19 13468 4608 4032 S 0.0 0.0 0:00.97 nfacct.+ 3930957 root 20 0 0 0 0 I 0.0 0.0 0:00.63 kworker+ 3931508 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3931618 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3932214 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3933100 root 20 0 0 0 0 I 0.0 0.0 0:00.03 kworker+ 3933377 root 20 0 0 0 0 I 0.0 0.0 0:00.02 kworker+ 3933942 root 20 0 0 0 0 I 0.0 0.0 0:00.05 kworker+ 3934409 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3935192 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3935390 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3935489 root 20 0 0 0 0 I 0.0 0.0 0:00.07 kworker+ 3936813 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3937324 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3937329 116 39 19 4588 3072 2880 S 0.0 0.0 0:02.76 bash 3938021 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3938692 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3938704 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3939059 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3939164 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3939363 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3939411 root 20 0 0 0 0 I 0.0 0.0 0:00.04 kworker+ 3939616 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3939668 root 20 0 0 0 0 I 0.0 0.0 0:00.01 kworker+ 3939832 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940022 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940194 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940293 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940514 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940521 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940942 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3940943 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941343 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941345 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941357 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941358 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941364 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941366 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941367 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941535 root 20 0 42140 4240 3648 S 0.0 0.0 0:00.00 cron 3941536 cmpbib 20 0 2800 1536 1536 S 0.0 0.0 0:00.00 sh 3941541 root 20 0 29388 5544 2496 S 0.0 0.0 0:00.00 (udev-w+ 3941542 root 20 0 29388 5132 2112 S 0.0 0.0 0:00.00 (udev-w+ 3941543 root 20 0 29388 5132 2112 S 0.0 0.0 0:00.00 (udev-w+ 3941546 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941547 cmpbib 20 0 22984 4416 4224 S 0.0 0.0 0:00.00 mefpp_i+ 3941559 cmpbib 20 0 1763100 18240 14592 S 0.0 0.0 0:00.07 starter+ 3941579 cmpbib 20 0 7048 3264 3072 S 0.0 0.0 0:00.05 bash 3941594 root 20 0 0 0 0 I 0.0 0.0 0:00.00 kworker+ 3941601 cmpbib 20 0 4364 3072 2880 S 0.0 0.0 0:00.01 bash 3941629 cmpbib 20 0 7184 3264 3072 S 0.0 0.0 0:00.01 bash 3941648 cmpbib 20 0 7712 3840 3264 S 0.0 0.0 0:00.01 bash ====================== df -h donne: Filesystem Size Used Avail Use% Mounted on overlay 64M 12K 64M 1% / udev 95G 0 95G 0% /dev tmpfs 95G 308K 95G 1% /dev/shm /dev/sda2 63G 26G 35G 43% /tmp cantal:/disk_cmpbib/users/cmpbib 916G 608G 262G 70% /users/cmpbib tmpfs 64M 12K 64M 1% /etc/group serveur:/disque_cmpgiref/users/cmpgiref 917G 820G 51G 95% /users/cmpgiref /dev/mapper/pmi 209G 165G 34G 84% /pmi serveur:/home/cluster 5.5T 4.7T 456G 92% /cluster ====================== ====================== Nous avons le process group id: 3941536 On a tous ces dépôts a prendre en compte: GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation depots_a_compiler: GIREF BIB InterfaceQtVTK doit_avoir_depots_non_propres ne contient rien... on y met: 0 Agent pid 3941686 SSH_AGENT_PID: 3941686 Identity added: /users/cmpbib/.ssh/id_dsa_giref (/users/cmpbib/.ssh/id_dsa_giref) Identity added: /users/cmpbib/.ssh/id_rsa_giref (/users/cmpbib/.ssh/id_rsa_giref) Configuration des modes pour GIREF depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour TestValidation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour Validation depots_modes ne contient rien... on y met: opt dev Configuration des modes pour InterfaceQtVTK depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour webMEF depots_modes contient déjà: opt Configuration des modes pour BIB depots_modes ne contient rien... on y met: opt app_opt dev app_dev Configuration des modes pour BIBTestValidation depots_modes ne contient rien... on y met: opt dev nb_proc contient: 5 nb_proc_app ne contient rien... on y met: 5 nb_proc_TV contient: 6 Préparation des 1 dépôts (GIREF TestValidation Validation InterfaceQtVTK webMEF BIB BIBTestValidation) dans le map liste_depots. ----------------------------- Traitements pour le dépot GIREF On va 'fetcher' le dépôt GIREF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:GIREF t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE Cleared directory 'dep/CLI11' Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) unregistered for path 'dep/CLI11' Cleared directory 'dep/picojson' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) unregistered for path 'dep/picojson' Cleared directory 'dep/pybind11' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) unregistered for path 'dep/pybind11' Cleared directory 'dep/rapidjson' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) unregistered for path 'dep/rapidjson' Cleared directory 'dep/spdlog' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) unregistered for path 'dep/spdlog' On valide le dépôt GIREF avec la référence: 18ae756f6383e99d1298047fe08c2dddef84726f Removing Makefile.local Removing bin/ Removing lib/ Removing obj/ Removing src/commun/ExpressionAlgebrique/Parser.cc Removing src/commun/ExpressionAlgebrique/Parser.h Removing src/commun/ExpressionAlgebrique/Parser.y Removing src/commun/ExpressionAlgebrique/Scanner.cc Removing src/commun/ExpressionAlgebrique/Scanner.h Removing src/commun/ExpressionAlgebrique/Scanner.icc Removing src/commun/ExpressionAlgebrique/Scanner.lex Removing src/commun/Petsc/reqMapMacrosPetsc.h Removing src/commun/Util/GIREFStatusDepots.h HEAD is now at 18ae756f63 BUG (maintenance): Revient à spdlog 1.14.1... Submodule 'dep/CLI11' (mefgit@cantal.giref.ulaval.ca:CLI11) registered for path 'dep/CLI11' Submodule 'dep/picojson' (mefgit@cantal.giref.ulaval.ca:picojson.git) registered for path 'dep/picojson' Submodule 'dep/pybind11' (mefgit@cantal.giref.ulaval.ca:pybind11.git) registered for path 'dep/pybind11' Submodule 'dep/rapidjson' (mefgit@cantal.giref.ulaval.ca:rapidjson) registered for path 'dep/rapidjson' Submodule 'dep/spdlog' (mefgit@cantal.giref.ulaval.ca:spdlog) registered for path 'dep/spdlog' Submodule path 'dep/CLI11': checked out '4af78beef777e313814b4daff70e2da9171a385a' Submodule path 'dep/picojson': checked out '111c9be5188f7350c2eac9ddaedd8cca3d7bf394' Submodule path 'dep/pybind11': checked out '2fb3d7cbde264a0b3f921e802f287195387e8263' Submodule path 'dep/rapidjson': checked out '083f359f5c36198accc2b9360ce1e32a333231d9' Submodule path 'dep/spdlog': checked out '27cb4c76708608465c413f6d0e6b8d99a4d84302' On nettoie le dépôt GIREF: On demande ce range : 18ae756f6383e99d1298047fe08c2dddef84726f..18ae756f6383e99d1298047fe08c2dddef84726f ----------------------------- ----------------------------- Traitements pour le dépot TestValidation On va 'fetcher' le dépôt TestValidation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:TestValidation 21a5e18a8..d56121e03 master -> origin/master * [new branch] TEC_UBSAn -> origin/TEC_UBSAn * [new branch] TEC_retrait_dateutil -> origin/TEC_retrait_dateutil * [new tag] dernier_push_TEC_UBSAn_dmartin -> dernier_push_TEC_UBSAn_dmartin Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:TestValidation t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE t [tag update] dernier_push_TEC_retrait_dateutil_rchenard -> dernier_push_TEC_retrait_dateutil_rchenard t [tag update] dernier_push_master_rchenard -> dernier_push_master_rchenard On valide le dépôt TestValidation avec la référence: d56121e03a26570cb94d3a249e539d4b3e045554 Removing Ressources/dev/Test.DiffusionInstationnaire/Ressources.DiffusionInst.0.00_2procs/DiffusionInst.0.00_2procs.2.part Removing Ressources/dev/Test.DiffusionInstationnaire/Ressources.DiffusionInst.0.01_2procs/DiffusionInst.0.01_2procs.2.part Removing Ressources/dev/Test.DiffusionInstationnaire/Ressources.DiffusionInst.0.02_2procs/DiffusionInst.0.02_2procs.2.part Removing Ressources/dev/Test.DiffusionInstationnaire/Ressources.DiffusionInst.0.03_2procs/DiffusionInst.0.03_2procs.2.part Removing Ressources/dev/Test.DiviseAretesEn2/Ressources.TousTypes_div2_HexaImplose_ERR_JACOBIEN_NUL_OU_NEGATIF_2proc/TousTypes_div2_HexaImplose_ERR_JACOBIEN_NUL_OU_NEGATIF_2proc.2.part Removing Ressources/dev/Test.MEF++/Ressources.ChampPPI_initialisation_partielle/ChampPPI_initialisation_partielle.2.part Removing Ressources/dev/Test.MEF++/Ressources.ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc/ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc.2.part Removing Ressources/dev/Test.MEF++/Ressources.ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc/ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc.3.part Removing Ressources/dev/Test.MEF++/Ressources.ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc/carre_div2.2.part Removing Ressources/dev/Test.MEF++/Ressources.ContactDefDefLagAug_MSE_2carres_4ElemsQuad_Changement_NonZeros_2proc/carre_div2.3.part Removing 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Scripts/Testeur/Cheetah/Macros/__pycache__/ Removing Scripts/Testeur/Cheetah/Utils/__pycache__/ Removing Scripts/Testeur/Cheetah/__pycache__/ Removing Scripts/Testeur/__pycache__/ Removing Scripts/Testeur/chrono_plot/chrono_plot/__pycache__/ HEAD is now at d56121e03 AQL (mefpp#1814, !1053): Rectifie un doctest. On nettoie le dépôt TestValidation: On demande ce range : 21a5e18a840ac1cfc0bd86894ea018b4d933f963..d56121e03a26570cb94d3a249e539d4b3e045554 ----------------------------- ----------------------------- Traitements pour le dépot Validation On va 'fetcher' le dépôt Validation avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. 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Removing Test.Modules/opt/testExecutionMacro.ouvreProjetResoutStokes_3D.macro.resultats Removing Test.Modules/opt/testExecutionMacro.ouvreProjetResoutStokes_3D.macro.resultats.bruts Removing Test.Modules/opt/testExecutionMacro.ouvreProjetResoutStokes_3D.macro.resultats.diff Removing Test.Modules/opt/testExecutionMacro.ouvreProjetResoutStokes_3D.macro.resultats.produit Removing Test.Modules/opt/testExecutionMacro.ouvreProjetResoutStokes_3D.macro.resultats.produit.diff Removing Test.Validation/dev/CarreRef4_biz.temps Removing Test.Validation/dev/testConstructionGeometrieAretesVives.CarreRef4_biz.resultats Removing Test.Validation/dev/testConstructionGeometrieAretesVives.CarreRef4_biz.resultats.diff Removing Test.Validation/dev/testConstructionGeometrieAretesVives.CarreRef4_biz.resultats.produit Removing Test.Validation/dev/testConstructionGeometrieAretesVives.CarreRef4_biz.resultats.produit.diff Removing Test.Validation/opt/CarreRef4_biz.temps Removing 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Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:InterfaceQtVTK t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE On valide le dépôt InterfaceQtVTK avec la référence: aa056111385bdc061cfd458d9e25d0519514f3d1 Removing Makefile.local Removing bin/ Removing lib/ Removing obj/ Removing src/interface/Adaptation/mDiaAdaptationMaillage.cc Removing src/interface/Adaptation/mDiaAdaptationMaillage2D.cc Removing src/interface/Adaptation/mDiaAdaptationMaillage2DData.cc Removing src/interface/Adaptation/mDiaAdaptationMaillageData.cc Removing src/interface/Adaptation/mDiaEditionSequence.cc Removing src/interface/Adaptation/mDiaEditionSequenceData.cc Removing src/interface/Adaptation/mDiaInformationsMetriqueAdapt2D.cc Removing src/interface/Adaptation/mDiaInformationsMetriqueAdapt2DData.cc Removing src/interface/Adaptation/mDiaInformationsMetriques.cc Removing src/interface/Adaptation/mDiaInformationsMetriquesData.cc Removing src/interface/Adaptation/mDiaMetrique.cc Removing src/interface/Adaptation/mDiaMetriqueData.cc Removing 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src/interface/VTK/mDlgParamDeplacementChamp.cc Removing src/interface/VTK/mDlgParamDeplacementChampData.cc Removing src/interface/VTK/mInterfaceSignalQt_FenetreVTK_CellPicker.cc Removing src/interface/VTK/mTabPrefFenetre3D.cc Removing src/interface/VTK/mTabPrefFenetre3DData.cc Removing src/interface/VTK/mTabPrefModuleActeurChampScalaire.cc Removing src/interface/VTK/mTabPrefModuleActeurChampScalaireData.cc Removing src/interface/VTK/mTabPrefModuleActeurChampVectoriel.cc Removing src/interface/VTK/mTabPrefModuleActeurChampVectorielData.cc Removing src/interface/VTK/mTabPrefModuleActeurGeoAretes.cc Removing src/interface/VTK/mTabPrefModuleActeurGeoAretesData.cc Removing src/interface/VTK/mTabPrefModuleActeurGeometrie.cc Removing src/interface/VTK/mTabPrefModuleActeurGeometrieData.cc Removing src/interface/VTK/mTabPrefModuleActeurMaillage.cc Removing src/interface/VTK/mTabPrefModuleActeurMaillageData.cc Removing src/interface/VTK/mTabPrefModuleActeurPointsGeoAretes.cc Removing src/interface/VTK/mTabPrefModuleActeurPointsGeoAretesData.cc Removing src/interface/VTK/mqgl.cc Removing src/interface/VTK/mqgl_x11.cc Removing src/interface/VTK/mvtkQtRenderWindow.cc Removing src/interface/Visualisation/mDiaVisuSectionsMaillage.cc Removing src/interface/Visualisation/mDiaVisuSectionsMaillageData.cc Removing src/interface/Visualisation/mDlgVisualisation.cc Removing src/interface/Visualisation/mDlgVisualisationData.cc Removing src/interface/Visualisation/mQCheckListItemAvecSignalActivation.cc Removing src/interface/Visualisation/mRechercheDlg.cc Removing src/interface/Visualisation/mRechercheDlgData.cc Removing src/interface/Visualisation/mWidgetDeformeeChampVectoriel.cc Removing src/interface/Visualisation/mWidgetDeformeeChampVectorielData.cc Removing src/interface/Visualisation/mWidgetEchelleV3D.cc Removing src/interface/Visualisation/mWidgetEchelleV3DData.cc Removing src/interface/Visualisation/mWidgetIsoValeurs.cc Removing src/interface/Visualisation/mWidgetIsoValeursData.cc Removing src/interface/Visualisation/mWidgetMinMaxChampScalaire.cc Removing src/interface/Visualisation/mWidgetMinMaxChampScalaireData.cc Removing src/interface/Visualisation/mWidgetOpenGL.cc Removing src/interface/Visualisation/mWidgetPlanCoupe.cc Removing src/interface/Visualisation/mWidgetPlanCoupeData.cc Removing src/interface/Visualisation/mWidgetVueChampTensoriel.cc Removing src/interface/Visualisation/mWidgetVueChampTensorielData.cc Removing src/interface/Visualisation/mWidgetVueChampVectoriel.cc Removing src/interface/Visualisation/mWidgetVueChampVectorielData.cc Removing src/modules/Modules/Utilitaires/IMEFStatusDepots.h HEAD is now at aa056111 AQL (maintenance, !57): le SolveurPETScStokes n'existe plus On nettoie le dépôt InterfaceQtVTK: On demande ce range : aa056111385bdc061cfd458d9e25d0519514f3d1..aa056111385bdc061cfd458d9e25d0519514f3d1 ----------------------------- ----------------------------- Traitements pour le dépot webMEF On va 'fetcher' le dépôt webMEF avec l'url: mefgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:webMEF t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE error: could not lock config file .git/modules/webmef/src/static/paraview-glance/config: No such file or directory warning: Could not unset core.worktree setting in submodule 'webmef/src/static/paraview-glance' Cleared directory 'webmef/src/static/paraview-glance' On valide le dépôt webMEF avec la référence: 24854bd8ef580ed05c9935a94df008bde207a477 HEAD is now at 24854bd BUG (IC, !11): Force "bash" comme shell par défaut pour les appels dans le Makefile... On nettoie le dépôt webMEF: On demande ce range : 24854bd8ef580ed05c9935a94df008bde207a477..24854bd8ef580ed05c9935a94df008bde207a477 ----------------------------- ----------------------------- Traitements pour le dépot BIB On va 'fetcher' le dépôt BIB avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. Warning: Permanently added 'cantal.giref.ulaval.ca' (ED25519) to the list of known hosts. From cantal.giref.ulaval.ca:BIB t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE On valide le dépôt BIB avec la référence: 442990e9bdfba333d13f5ad0bf8af8acfbe4da1d Removing Makefile.local Removing bin/ Removing lib/ Removing obj/ Removing src/commun/ExpressionAlgebrique/BIBParser.cc Removing src/commun/ExpressionAlgebrique/BIBParser.h Removing src/commun/ExpressionAlgebrique/BIBParser.y Removing src/commun/ExpressionAlgebrique/BIBScanner.cc Removing src/commun/ExpressionAlgebrique/BIBScanner.h Removing src/commun/ExpressionAlgebrique/BIBScanner.icc Removing src/commun/ExpressionAlgebrique/BIBScanner.lex Removing src/commun/Util/BIBStatusDepots.h HEAD is now at 442990e9b FCT (THORR, MFPM#3678, !978): Changement valeur par défaut de visco::utilise_pretraitement_couronne pour 1 On nettoie le dépôt BIB: On demande ce range : 442990e9bdfba333d13f5ad0bf8af8acfbe4da1d..442990e9bdfba333d13f5ad0bf8af8acfbe4da1d ----------------------------- ----------------------------- Traitements pour le dépot BIBTestValidation On va 'fetcher' le dépôt BIBTestValidation avec l'url: bibgit@cantal.giref.ulaval.ca:, branche master Already on 'master' Your branch is up to date with 'origin/master'. 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From cantal.giref.ulaval.ca:BIBTestValidation t [tag update] ICAQL_JAUNE -> ICAQL_JAUNE t [tag update] dernier_push_master_ericc -> dernier_push_master_ericc On valide le dépôt BIBTestValidation avec la référence: 6e79ebbe722c8852f0149ec81c670c369a5c7608 Removing Ressources/dev/Test.BIBProblemeGD/Ressources.Adhesion_CDD_2Cubes_4ElemHexa_Traction_Collant/Adhesion_CDD_2Cubes_4ElemHexa_Traction_Collant.champs_include_inconnus_adaptation Removing Ressources/dev/Test.BIBProblemeGD/Ressources.Anisotropie_cinematique_non_affine/Anisotropie_cinematique_non_affine.champs_include_inconnus_adaptation Removing Ressources/dev/Test.BIBProblemeGD/Ressources.Contact_Adherent/Contact_Adherent.champs_include_inconnus_adaptation Removing Ressources/dev/Test.BIBProblemeGD/Ressources.Contact_Frot/Contact_Frot.champs_include_inconnus_adaptation Removing Ressources/dev/Test.BIBProblemeGD/Ressources.Contact_a0_compression_force/Contact_a0_compression_force.champs_include_inconnus_adaptation Removing 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Ressources/opt/Test.thermiqueR3D/Ressources.thermique_sur_minidou_echangeKM/thermique_sur_minidou_echangeKM_the_coefs.champs Removing Ressources/opt/Test.thermiqueR3D/Ressources.xt1_mini_iso_theta_oe/xt1_mini_iso_theta_oe_the_coefs.champs HEAD is now at 6e79ebbe72 AQL (maintenance): Ajustement epsilons: passage à Petsc 3.21.6 et icpx sur saruman. 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Collecting kiwisolver>=1.3.1 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached kiwisolver-1.4.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.3 kB) Collecting pyparsing>=2.3.1 (from matplotlib->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 10)) Using cached pyparsing-3.2.0-py3-none-any.whl.metadata (5.0 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh->-r /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/TestValidation/Scripts/requirements.txt (line 1)) Using cached MarkupSafe-3.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Using cached bokeh-3.6.2-py3-none-any.whl (6.9 MB) Using cached CT3-3.4.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.whl (865 kB) Using cached 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jinja2-3.1.4-py3-none-any.whl (133 kB) Using cached kiwisolver-1.4.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.5 MB) Using cached packaging-24.2-py3-none-any.whl (65 kB) Using cached pillow-11.0.0-cp312-cp312-manylinux_2_28_x86_64.whl (4.4 MB) Using cached pyparsing-3.2.0-py3-none-any.whl (106 kB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) Using cached PyYAML-6.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (767 kB) Using cached tornado-6.4.2-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (437 kB) Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB) Using cached xyzservices-2024.9.0-py3-none-any.whl (85 kB) Using cached MarkupSafe-3.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Installing collected packages: pytz, xyzservices, tzdata, tornado, six, setuptools, PyYAML, pyparsing, pyarrow, psutil, pillow, packaging, numpy, MarkupSafe, kiwisolver, fonttools, cycler, CT3, cheetah3, scipy, python-dateutil, Jinja2, contourpy, pandas, matplotlib, bokeh Successfully installed CT3-3.4.0 Jinja2-3.1.4 MarkupSafe-3.0.2 PyYAML-6.0.2 bokeh-3.6.2 cheetah3-3.2.6.post1 contourpy-1.3.1 cycler-0.12.1 fonttools-4.55.2 kiwisolver-1.4.7 matplotlib-3.9.3 numpy-1.26.4 packaging-24.2 pandas-2.2.3 pillow-11.0.0 psutil-6.1.0 pyarrow-18.1.0 pyparsing-3.2.0 python-dateutil-2.9.0.post0 pytz-2024.2 scipy-1.14.1 setuptools-75.6.0 six-1.17.0 tornado-6.4.2 tzdata-2024.2 xyzservices-2024.9.0 Fin création du virtualenv Execution du hook de configuration /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/GIREF/scripts/Petsc/compile-petsc-master.sh debug ============================================================================================= Mode: mode = debug Variables d'environnement utilisées: vpetsc = repo-petsc-main prefix = /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug WGET = git petsc_GIT = petsc_SHA = MEFPP_PYTHON3 = /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 MPIdir = /opt/mpi/openmpi-4.1.6-opt LibLAPACK = mkl MKLROOT = /opt/intel/oneapi/mkl/2024.1 LibLAPACK_DIR = AvecIndices64bit = 0 WITH_XXX_COMPILERS = OPTFLAGS = copie_configure_log = /users/cmpgiref/public_html/petsc-main-debug ============================================================================================= Assurez-vous d'avoir installé la MKL avec l'option 'cluster'. On a détecté que la librairie MPI est: 'OPENMPI'. OPTIONS_COPTFLAGS= git clone --depth 100 https://gitlab.com/petsc/petsc.git -b main repo-petsc-main-debug Cloning into 'repo-petsc-main-debug'... SHA GIT courant: commit ec3352621bf6eba4f8b217cfabff967d595dc8d5 Merge: d555c467 409bb69a Author: Satish Balay Date: Sat Dec 7 06:14:15 2024 +0000 Merge branch 'nathawani/fix-project-jetdegree' into 'main' Fix jet degree in DMProjectLocal_Generic_Plex() See merge request petsc/petsc!8043 ============================================================================================= Voici la commande de configuration: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 ./configure --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-petsc4py=yes --with-slepc4py=yes --with-python-exec=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 --have-numpy=yes --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib=-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 ============================================================================================= ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-party.git for PARTY ============================================================================================= ============================================================================================= Compiling party; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/hdf5-1.14.3-p1.tar.bz2 for HDF5 ============================================================================================= ============================================================================================= Running configure on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HDF5; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/Kitware/CMake/releases/download/v3.31.1/cmake-3.31.1.tar.gz for CMAKE ============================================================================================= ============================================================================================= Running configure on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on CMAKE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-metis.git for METIS ============================================================================================= ============================================================================================= Configuring METIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS ============================================================================================= ============================================================================================= Configuring PARMETIS with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH ============================================================================================= ============================================================================================= Configuring PTSCOTCH with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing PTSCOTCH; this may take several minutes ============================================================================================= ============================================================================================= BLASLAPACK: Looking for multi-threaded MKL for C/Pardiso ============================================================================================= ============================================================================================= Trying to download https://web.cels.anl.gov/projects/petsc/download/externalpackages/spai-3.0-p1.tar.gz for SPAI ============================================================================================= ============================================================================================= Configuring, compiling and installing Spai; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use ml at https://trilinos.github.io ************************************************************************************************** ============================================================================================= Trying to download https://gitlab.com/petsc/pkg-trilinos-ml for ML ============================================================================================= ============================================================================================= Configuring ML with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing ML; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu for SUPERLU ============================================================================================= ============================================================================================= Configuring SUPERLU with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/pghysels/STRUMPACK for STRUMPACK ============================================================================================= ============================================================================================= Configuring STRUMPACK with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing STRUMPACK; this may take several minutes ============================================================================================= ************************************************************************************************** Please register to use MUMPS at https://mumps-solver.org/index.php?page=dwnld#form ************************************************************************************************** ============================================================================================= Trying to download https://mumps-solver.org/MUMPS_5.7.3.tar.gz for MUMPS ============================================================================================= ============================================================================================= Compiling MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Installing MUMPS; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/xiaoyeli/superlu_dist for SUPERLU_DIST ============================================================================================= ============================================================================================= Configuring SUPERLU_DIST with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUPERLU_DIST; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/DrTimothyAldenDavis/SuiteSparse for SUITESPARSE ============================================================================================= ============================================================================================= Configuring SUITESPARSE with CMake; this may take several minutes ============================================================================================= ============================================================================================= Compiling and installing SUITESPARSE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://github.com/hypre-space/hypre for HYPRE ============================================================================================= ============================================================================================= Running configure on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Running make install on HYPRE; this may take several minutes ============================================================================================= ============================================================================================= Trying to download https://gitlab.com/slepc/slepc.git for SLEPC ============================================================================================= ============================================================================================= SLEPc examples are available at arch-linux-c-debug/externalpackages/git.slepc export SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug ============================================================================================= ============================================================================================= Trying to download https://github.com/hpddm/hpddm for HPDDM ============================================================================================= ============================================================================================= Copying HPDDM; this may take several seconds ============================================================================================= Compilers: C Compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Version: gcc (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) C++ Compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC Version: g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Fortran Compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 Version: GNU Fortran (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Linkers: Shared linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Dynamic linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Libraries linked against: -lquadmath BlasLapack: Intel MKL Version: 20240001 Libraries: -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads uses 4 byte integers MPI: Version: 3 Includes: -I/opt/mpi/openmpi-4.1.6-opt/include mpiexec: /opt/mpi/openmpi-4.1.6-opt/bin/mpiexec Implementation: openmpi OMPI_VERSION: 4.1.6 X: Libraries: -lX11 python: Executable: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 pthread: cmake: Version: 3.31.1 Executable: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/bin/cmake hdf5: Version: 1.14.3 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lhdf5_hl -lhdf5 hypre: Version: 2.32.0 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lHYPRE metis: Version: 5.1.0 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lmetis slepc: Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lslepc SuiteSparse: Version: 7.8.3 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lspqr -lumfpack -lklu -lcholmod -lamd SuperLU_DIST: Version: 9.0.0 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lsuperlu_dist parmetis: Version: 4.0.3 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lparmetis PTScotch: Version: 7.0.6 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr bison: Version: 3.8 Executable: /usr/bin/bison MUMPS: Version: 5.7.3 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -ldmumps -lmumps_common -lpord -lpthread scalapack: Libraries: -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 PARTY: Version: 1.99 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lparty SuperLU: Version: 6.0.1 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lsuperlu mkl_pardiso: Includes: -I/opt/intel/oneapi/mkl/2024.1/include uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads ml: Version: 13.2.0 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lml hpddm: Version: 2.3.1 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include mkl_cpardiso: Includes: -I/opt/intel/oneapi/mkl/2024.1/include mkl_sparse: uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads mkl_sparse_optimize: uses OpenMP; use export OMP_NUM_THREADS=

or -omp_num_threads

to control the number of threads petsc4py: PYTHONPATH: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib regex: spai: Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lspai strumpack: Version: 8.0.0 Includes: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include Libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lstrumpack PETSc: Language used to compile PETSc: C PETSC_ARCH: arch-linux-c-debug PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug Prefix: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 64 bytes Using GNU make: /usr/bin/gmake xxx=======================================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_ARCH=arch-linux-c-debug all xxx=======================================================================================xxx /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-debug gmake[2]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. https://petsc.org/release/community/mailing/ ========================================== Starting make run on dms12 at Sat, 07 Dec 2024 18:29:31 -0500 Machine characteristics: Linux dms12 6.8.0-49-generic #49-Ubuntu SMP PREEMPT_DYNAMIC Mon Nov 4 02:06:24 UTC 2024 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug Using PETSc arch: arch-linux-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 22 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using configure Options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-petsc4py=yes --with-slepc4py=yes --with-python-exec=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 --have-numpy=yes --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib="-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64" Using configuration flags: #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CMAKE 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_CXX_DIALECT_CXX20 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MKL_CPARDISO 1 #define PETSC_HAVE_MKL_INCLUDES 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_PARDISO 1 #define PETSC_HAVE_MKL_SET_NUM_THREADS 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_ML 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_COUNT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_NO_FINITE_MATH_ONLY 1 #define PETSC_HAVE_OPENMPI 1 #define PETSC_HAVE_PACKAGES ":amd:blaslapack:cholmod:cmake:hdf5:hpddm:hypre:klu:mathlib:metis:mkl_cpardiso:mkl_pardiso:mkl_sparse:mkl_sparse_optimize:ml:mpi:mumps:parmetis:party:pthread:ptscotch:regex:scalapack:spai:spqr:strumpack:superlu:superlu_dist:umfpack:x11:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARTY 1 #define PETSC_HAVE_PETSC4PY 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_MUTEX 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_DEFAULT 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SHMGET 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SPAI 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_STRUMPACK 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SUPERLU_DIST 1 #define PETSC_HAVE_SUPERLU_DIST_SINGLE 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_LIB_NAME_SUFFIX "" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 64 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/usr/bin/gmake --no-print-directory" #define PETSC_PETSC4PY_INSTALL_PATH "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2024-12-07 06:14:15 +0000" #define PETSC_VERSION_GIT "v3.22.2-222-gec335262" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o .o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 mpicc -show: gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using C++ compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpicxx -show: g++ -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using Fortran compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 -o .o -c -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpif90 -show: gfortran -I/opt/mpi/openmpi-4.1.6-opt/include -I/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Fortran compiler version: GNU Fortran (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) ----------------------------------------- Using C/C++ linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Using Fortran linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 Using Fortran flags: -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using system modules: Using mpi.h: # 1 "/opt/mpi/openmpi-4.1.6-opt/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -lsuperlu_dist -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lquadmath ------------------------------------------ Using mpiexec: /opt/mpi/openmpi-4.1.6-opt/bin/mpiexec --oversubscribe ------------------------------------------ Using MAKE: /usr/bin/gmake Default MAKEFLAGS: MAKE_NP:12 MAKE_LOAD:36.0 MAKEFLAGS: -j24 --jobserver-auth=fifo:/tmp/GMfifo4021793 --no-print-directory -- PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_ARCH=arch-linux-c-debug ========================================== /usr/bin/gmake --print-directory -f gmakefile -l36.0 --output-sync=recurse V= libs gmake[3]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug' CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/matmatmatmult.o CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/symtranspose.o CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/mattransposematmult.o CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/matptap.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/drawopenx.o CC arch-linux-c-debug/obj/src/mat/impls/aij/seq/matrart.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xcolor.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/null/drawnull.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xioerr.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/tikz/tikz.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xinit.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xtext.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/xtone.o CC arch-linux-c-debug/obj/src/sys/classes/bm/interfaces/bm.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dclear.o CC arch-linux-c-debug/obj/src/sys/classes/draw/interface/dcoor.o CC arch-linux-c-debug/obj/src/sys/classes/draw/impls/x/ximage.o CC 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arch-linux-c-debug/obj/src/sys/logging/handler/interface/loghandler.o CC arch-linux-c-debug/obj/src/sys/classes/viewer/impls/binary/binv.o CC arch-linux-c-debug/obj/src/sys/objects/finit.o CC arch-linux-c-debug/obj/src/sys/logging/state/logstate.o CC arch-linux-c-debug/obj/src/sys/objects/device/util/memory.o CC arch-linux-c-debug/obj/src/sys/logging/handler/impls/nested/lognested.o CC arch-linux-c-debug/obj/src/sys/objects/gcookie.o CC arch-linux-c-debug/obj/src/sys/objects/gcomm.o CC arch-linux-c-debug/obj/src/sys/objects/fcallback.o CC arch-linux-c-debug/obj/src/sys/objects/gtype.o CC arch-linux-c-debug/obj/src/sys/objects/device/util/devicereg.o CXX arch-linux-c-debug/obj/src/sys/objects/device/interface/memory.o CC arch-linux-c-debug/obj/src/sys/objects/destroy.o CC arch-linux-c-debug/obj/src/sys/objects/pgname.o CC arch-linux-c-debug/obj/src/sys/objects/package.o CC arch-linux-c-debug/obj/src/sys/objects/olist.o CC 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arch-linux-c-debug/obj/src/sys/utils/sseenabled.o CC arch-linux-c-debug/obj/src/sys/utils/sortd.o CC arch-linux-c-debug/obj/src/sys/utils/sortip.o CXX arch-linux-c-debug/obj/src/sys/objects/device/interface/dcontext.o CC arch-linux-c-debug/obj/src/sys/utils/mpiu.o CC arch-linux-c-debug/obj/src/sys/utils/psplit.o CC arch-linux-c-debug/obj/src/sys/objects/optionsyaml.o CC arch-linux-c-debug/obj/src/vec/is/ao/interface/aoreg.o CC arch-linux-c-debug/obj/src/vec/is/is/interface/isregall.o CC arch-linux-c-debug/obj/src/vec/is/ao/impls/mapping/aomapping.o CC arch-linux-c-debug/obj/src/vec/is/ao/impls/basic/aobasic.o CC arch-linux-c-debug/obj/src/vec/is/is/interface/isreg.o CC arch-linux-c-debug/obj/src/sys/objects/version.o CC arch-linux-c-debug/obj/src/sys/utils/str.o CC arch-linux-c-debug/obj/src/vec/is/ao/interface/ao.o CC arch-linux-c-debug/obj/src/sys/utils/mpits.o CXX arch-linux-c-debug/obj/src/sys/objects/device/interface/mark_dcontext.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/isblock.o CC arch-linux-c-debug/obj/src/sys/utils/sortso.o CC arch-linux-c-debug/obj/src/vec/is/is/utils/iscomp.o CC arch-linux-c-debug/obj/src/vec/is/is/impls/stride/stride.o CC arch-linux-c-debug/obj/src/vec/is/is/impls/block/block.o CC arch-linux-c-debug/obj/src/vec/is/ao/impls/memscalable/aomemscalable.o CC arch-linux-c-debug/obj/src/sys/utils/sorti.o CC arch-linux-c-debug/obj/src/sys/objects/pinit.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/gatherv/sfgatherv.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/allgather/sfallgather.o CC arch-linux-c-debug/obj/src/sys/objects/options.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/alltoall/sfalltoall.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/gather/sfgather.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/basic/sfmpi.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/dlregissf.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/sfregi.o CC 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arch-linux-c-debug/obj/src/vec/vec/impls/seq/vseqcr.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/bvec3.o CC arch-linux-c-debug/obj/src/vec/vec/impls/shared/shvec.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/commonmpvec.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/bvec1.o CC arch-linux-c-debug/obj/src/vec/vec/impls/hypre/vhyp.o CC arch-linux-c-debug/obj/src/vec/pf/interface/pf.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/pvec2.o CC arch-linux-c-debug/obj/src/vec/is/utils/psort.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/dvec2.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/pbvec.o CC arch-linux-c-debug/obj/src/vec/vec/impls/seq/bvec2.o CC arch-linux-c-debug/obj/src/vec/is/sf/utils/sfutils.o CC arch-linux-c-debug/obj/src/vec/is/sf/interface/vscat.o CC arch-linux-c-debug/obj/src/vec/is/sf/impls/window/sfwindow.o CC arch-linux-c-debug/obj/src/vec/is/utils/isltog.o CC arch-linux-c-debug/obj/src/vec/vec/impls/mpi/pdvec.o CC 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arch-linux-c-debug/obj/src/dm/impls/plex/transform/impls/extrude/plextrextrude.o CC arch-linux-c-debug/obj/src/dm/impls/product/product.o CC arch-linux-c-debug/obj/src/dm/impls/product/productutils.o CC arch-linux-c-debug/obj/src/mat/interface/matrix.o CC arch-linux-c-debug/obj/src/dm/impls/plex/plexpartition.o CC arch-linux-c-debug/obj/src/dm/impls/sliced/sliced.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stagintern.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stag1d.o CC arch-linux-c-debug/obj/src/dm/impls/redundant/dmredundant.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stagda.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stagstencil.o CC arch-linux-c-debug/obj/src/dm/impls/swarm/swarmpic_da.o CC arch-linux-c-debug/obj/src/dm/impls/swarm/data_ex.o CC arch-linux-c-debug/obj/src/dm/impls/shell/dmshell.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stag2d.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stag.o CC arch-linux-c-debug/obj/src/dm/impls/swarm/swarmpic_sort.o CC 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arch-linux-c-debug/obj/src/dm/partitioner/impls/gather/partgather.o CC arch-linux-c-debug/obj/src/dm/interface/dmregall.o CC arch-linux-c-debug/obj/src/dm/partitioner/impls/matpart/partmatpart.o CC arch-linux-c-debug/obj/src/dm/label/impls/ephemeral/dmlabeleph.o CC arch-linux-c-debug/obj/src/dm/impls/stag/stagutils.o CC arch-linux-c-debug/obj/src/dm/partitioner/impls/parmetis/partparmetis.o CC arch-linux-c-debug/obj/src/dm/partitioner/impls/shell/partshell.o CC arch-linux-c-debug/obj/src/dm/partitioner/impls/ptscotch/partptscotch.o CC arch-linux-c-debug/obj/src/dm/partitioner/impls/simple/partsimple.o CC arch-linux-c-debug/obj/src/dm/interface/dmperiodicity.o CC arch-linux-c-debug/obj/src/dm/partitioner/interface/partitionerreg.o CC arch-linux-c-debug/obj/src/dm/interface/dmi.o CC arch-linux-c-debug/obj/src/dm/impls/plex/plextree.o CC arch-linux-c-debug/obj/src/dm/impls/plex/plexcreate.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/bcgs/fbcgs/fbcgs.o CC 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CC arch-linux-c-debug/obj/src/ksp/ksp/impls/gmres/pgmres/pgmres.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/preonly/preonly.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/python/pythonksp.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/gmres/lgmres/lgmres.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/lcd/lcd.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/cheby/cheby.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/ibcgs/ibcgs.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/rich/richscale.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/gmres/dgmres/dgmres.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/symmlq/symmlq.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/tsirm/tsirm.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/tfqmr/tfqmr.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/rich/rich.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/qcg/qcg.o CC arch-linux-c-debug/obj/src/ksp/ksp/impls/lsqr/lsqr.o CC 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arch-linux-c-debug/obj/src/ksp/pc/impls/python/pythonpc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/pbjacobi/pbjacobi.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mg/gdsw.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/spai/dspai.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mg/mgfunc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gamg/agg.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/bddc/bddcschurs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/redistribute/redistribute.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/sor/sor.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/bitmask.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gasm/gasm.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/svd/svd.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/shell/shellpc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/bddc/bddc.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/spai/ispai.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/redundant/redundant.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/gamg/gamg.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope_coarsedm.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/pcregis.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/ivec.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/xxt.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/vpbjacobi/vpbjacobi.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/pcset.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/tfs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/xyt.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/comm.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/ml/ml.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mpi/pcmpi.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/tfs/gs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/mg/mg.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fasgalerkin.o CC arch-linux-c-debug/obj/src/snes/impls/gs/gssecant.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope.o CC arch-linux-c-debug/obj/src/snes/impls/al/al.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/telescope/telescope_dmda.o CC arch-linux-c-debug/obj/src/snes/impls/nasm/aspin.o CC arch-linux-c-debug/obj/src/snes/impls/ksponly/ksponly.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/wb/wb.o CC arch-linux-c-debug/obj/src/snes/impls/gs/snesgs.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/fieldsplit/fieldsplit.o CC arch-linux-c-debug/obj/src/snes/impls/ls/ls.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/anderson.o CC arch-linux-c-debug/obj/src/snes/impls/python/pythonsnes.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/ngmresfunc.o CC arch-linux-c-debug/obj/src/snes/impls/ms/ms.o CC arch-linux-c-debug/obj/src/snes/impls/composite/snescomposite.o CC arch-linux-c-debug/obj/src/snes/impls/ncg/snesncg.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fasfunc.o CC arch-linux-c-debug/obj/src/snes/impls/fas/fas.o CC arch-linux-c-debug/obj/src/snes/impls/shell/snesshell.o CC arch-linux-c-debug/obj/src/snes/impls/multiblock/multiblock.o CC arch-linux-c-debug/obj/src/snes/impls/richardson/snesrichardson.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesdnest.o CC arch-linux-c-debug/obj/src/snes/impls/patch/snespatch.o CC arch-linux-c-debug/obj/src/snes/impls/ngmres/snesngmres.o CC arch-linux-c-debug/obj/src/snes/interface/dlregissnes.o CC arch-linux-c-debug/obj/src/ksp/pc/interface/precon.o CC arch-linux-c-debug/obj/src/snes/impls/nasm/nasm.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesnoise.o CC arch-linux-c-debug/obj/src/snes/impls/qn/qn.o CC arch-linux-c-debug/obj/src/snes/interface/snesob.o CC arch-linux-c-debug/obj/src/snes/interface/snesj.o CC arch-linux-c-debug/obj/src/snes/interface/snesj2.o CC arch-linux-c-debug/obj/src/snes/interface/snesregi.o CC arch-linux-c-debug/obj/src/snes/interface/snespc.o CC arch-linux-c-debug/obj/src/snes/interface/noise/snesmfj2.o CC arch-linux-c-debug/obj/src/snes/impls/vi/ss/viss.o CC arch-linux-c-debug/obj/src/snes/impls/ntrdc/ntrdc.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/basic/linesearchbasic.o CC arch-linux-c-debug/obj/src/snes/impls/vi/vi.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/bisection/linesearchbisection.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/shell/linesearchshell.o CC arch-linux-c-debug/obj/src/snes/linesearch/interface/linesearchregi.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/cp/linesearchcp.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/l2/linesearchl2.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.o CC arch-linux-c-debug/obj/src/snes/impls/vi/rs/virs.o CC arch-linux-c-debug/obj/src/snes/linesearch/impls/bt/linesearchbt.o CC arch-linux-c-debug/obj/src/snes/mf/snesmfj.o CC arch-linux-c-debug/obj/src/snes/interface/snesut.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/cfl/adaptcfl.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/basic/adaptbasic.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/glee/adaptglee.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/patch/pcpatch.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/none/adaptnone.o CC arch-linux-c-debug/obj/src/snes/utils/convest.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/mocregis.o CC arch-linux-c-debug/obj/src/snes/impls/tr/tr.o CC arch-linux-c-debug/obj/src/ts/characteristic/impls/da/slda.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/dsp/adaptdsp.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/slregis.o CC arch-linux-c-debug/obj/src/snes/utils/dmlocalsnes.o CC arch-linux-c-debug/obj/src/ts/adapt/impls/history/adapthist.o CC arch-linux-c-debug/obj/src/snes/utils/dmdasnes.o CC arch-linux-c-debug/obj/src/snes/utils/dmsnes.o CC arch-linux-c-debug/obj/src/snes/utils/dm/dminterpolatesnes.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/euler/euler.o CC arch-linux-c-debug/obj/src/snes/linesearch/interface/linesearch.o CC arch-linux-c-debug/obj/src/snes/utils/dmplexsnes.o CC arch-linux-c-debug/obj/src/ts/impls/arkimex/fsarkimex.o CC arch-linux-c-debug/obj/src/ts/characteristic/interface/characteristic.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/ssp/ssp.o CC arch-linux-c-debug/obj/src/ts/impls/bdf/bdf.o CC arch-linux-c-debug/obj/src/ts/impls/eimex/eimex.o CC arch-linux-c-debug/obj/src/ts/event/tsevent.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/rk/mrk.o CC arch-linux-c-debug/obj/src/snes/utils/dm/dmadapt.o CC arch-linux-c-debug/obj/src/ts/adapt/interface/tsadapt.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/glle/glleadapt.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/alpha/alpha1.o CC arch-linux-c-debug/obj/src/ts/impls/python/pythonts.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/discgrad/tsdiscgrad.o CC arch-linux-c-debug/obj/src/ts/interface/dlregists.o CXX arch-linux-c-debug/obj/src/ksp/ksp/impls/hpddm/hpddm.o CC arch-linux-c-debug/obj/src/ts/impls/glee/glee.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/alpha/alpha2.o CC arch-linux-c-debug/obj/src/ts/impls/pseudo/posindep.o CC arch-linux-c-debug/obj/src/ts/impls/mimex/mimex.o CC arch-linux-c-debug/obj/src/ts/impls/explicit/rk/rk.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/irk/irk.o CC arch-linux-c-debug/obj/src/ts/interface/tscreate.o CC arch-linux-c-debug/obj/src/ts/interface/tsreg.o CC arch-linux-c-debug/obj/src/ts/interface/tsregall.o CC arch-linux-c-debug/obj/src/ts/interface/tseig.o CC arch-linux-c-debug/obj/src/ts/interface/tshistory.o CC arch-linux-c-debug/obj/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/basic/trajbasic.o CC arch-linux-c-debug/obj/src/ts/impls/arkimex/arkimex.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/singlefile/singlefile.o CC arch-linux-c-debug/obj/src/ts/interface/tsrhssplit.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/visualization/trajvisualization.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/glle/glle.o CC arch-linux-c-debug/obj/src/ts/impls/multirate/mprk.o CC arch-linux-c-debug/obj/src/ts/impls/rosw/rosw.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/hypre/hypre.o CC arch-linux-c-debug/obj/src/ts/trajectory/utils/reconstruct.o CC arch-linux-c-debug/obj/src/ts/impls/implicit/theta/theta.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bnls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/blmvm/blmvm.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bntl.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnkls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bntr.o CC arch-linux-c-debug/obj/src/ts/utils/tsconvest.o CXX arch-linux-c-debug/obj/src/ksp/pc/impls/hpddm/pchpddm.o CC arch-linux-c-debug/obj/src/ts/utils/dmnetworkts.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnk.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnktl.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnk/bqnktr.o CC arch-linux-c-debug/obj/src/ts/utils/dmdats.o CC arch-linux-c-debug/obj/src/ts/trajectory/impls/memory/trajmemory.o CC arch-linux-c-debug/obj/src/ts/interface/tsmon.o CC arch-linux-c-debug/obj/src/ts/interface/sensitivity/tssen.o CC arch-linux-c-debug/obj/src/ts/utils/dmlocalts.o CC arch-linux-c-debug/obj/src/ts/utils/dmplexts.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bqnls/bqnls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bncg/bncg.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssfls.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssils.o CC arch-linux-c-debug/obj/src/ts/trajectory/interface/traj.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/ssls/ssls.o CC arch-linux-c-debug/obj/src/tao/bound/impls/tron/tron.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/asls/asils.o CC arch-linux-c-debug/obj/src/tao/bound/impls/bnk/bnk.o CC arch-linux-c-debug/obj/src/ts/utils/dmts.o CC arch-linux-c-debug/obj/src/tao/complementarity/impls/asls/asfls.o CC arch-linux-c-debug/obj/src/tao/interface/dlregistao.o CC arch-linux-c-debug/obj/src/tao/interface/fdiff.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/almm/almmutils.o CC arch-linux-c-debug/obj/src/tao/interface/taosolverregi.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.o CC arch-linux-c-debug/obj/src/tao/bound/utils/isutil.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/unit/unit.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/armijo/armijo.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_bounds.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/almm/almm.o CC arch-linux-c-debug/obj/src/tao/linesearch/interface/dlregis_taolinesearch.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/morethuente/morethuente.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o CC arch-linux-c-debug/obj/src/tao/linesearch/impls/owarmijo/owarmijo.o CC arch-linux-c-debug/obj/src/tao/python/pythontao.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/brgn/brgn.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_fg.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/ipm/ipm.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver_hj.o CC arch-linux-c-debug/obj/src/tao/shell/taoshell.o CC arch-linux-c-debug/obj/src/tao/matrix/submatfree.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/admm/admm.o CC arch-linux-c-debug/obj/src/tao/snes/taosnes.o CC arch-linux-c-debug/obj/src/tao/matrix/adamat.o CC arch-linux-c-debug/obj/src/tao/quadratic/impls/gpcg/gpcg.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/cg/taocg.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/lmvm/lmvm.o CC arch-linux-c-debug/obj/src/snes/interface/snes.o CC arch-linux-c-debug/obj/src/tao/constrained/impls/ipm/pdipm.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/neldermead/neldermead.o CC arch-linux-c-debug/obj/src/tao/quadratic/impls/bqpip/bqpip.o CC arch-linux-c-debug/obj/src/tao/util/tao_util.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/bmrm/bmrm.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/ntr/ntr.o CC arch-linux-c-debug/obj/src/tao/pde_constrained/impls/lcl/lcl.o CC arch-linux-c-debug/obj/src/tao/linesearch/interface/taolinesearch.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/owlqn/owlqn.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/ntl/ntl.o CC arch-linux-c-debug/obj/src/tao/unconstrained/impls/nls/nls.o CC arch-linux-c-debug/obj/src/tao/leastsquares/impls/pounders/pounders.o CC arch-linux-c-debug/obj/src/ts/utils/dmplexlandau/plexland.o CC arch-linux-c-debug/obj/src/tao/interface/taosolver.o CC arch-linux-c-debug/obj/src/ts/interface/ts.o CC arch-linux-c-debug/obj/src/ksp/pc/impls/bddc/bddcprivate.o CLINKER arch-linux-c-debug/lib/libpetsc.so.3.022.2 gmake[3]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug' gmake[2]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug' ========================================= Now to install the libraries do: make PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_ARCH=arch-linux-c-debug install ========================================= *** Using PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_ARCH=arch-linux-c-debug *** *** Installing PETSc at prefix location: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH="" check ==================================== /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_INSTALL=install install-builtafterpetsc /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug PETSC_INSTALL=install petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install *** Building petsc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_src fetching build requirement 'Cython >= 3.0.0' using Cython 3.0.11 cythonizing 'petsc4py/PETSc.pyx' -> 'petsc4py/PETSc.c' running build_py creating build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/typing.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py creating build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib creating build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes copying src/petsc4py/lib/_pytypes/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes creating build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/py.typed -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc_api.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.h -> build/lib.linux-x86_64-cpython-312/petsc4py creating build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/numpy.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pybuffer.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pyscalar.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/petsc.cfg -> build/lib.linux-x86_64-cpython-312/petsc4py/lib running build_ext PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.2 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc building 'PETSc' extension creating build/temp.linux-x86_64-cpython-312/src/petsc4py /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -fPIC -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc -Isrc/petsc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib64/python3.12/site-packages/numpy/core/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/include -I/usr/include/python3.12 -c src/petsc4py/PETSc.c -o build/temp.linux-x86_64-cpython-312/src/petsc4py/PETSc.o /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -shared -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions build/temp.linux-x86_64-cpython-312/src/petsc4py/PETSc.o -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/usr/lib64 -Wl,--enable-new-dtags,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lpetsc -o build/lib.linux-x86_64-cpython-312/petsc4py/lib/PETSc.cpython-312-x86_64-linux-gnu.so writing build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg *** Installing petsc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install running build running build_src running build_py copying src/petsc4py/typing.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/_pytypes/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes copying src/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/lib/_pytypes/viewer/__init__.py -> build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer copying src/petsc4py/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/__main__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/py.typed -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc_api.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/PETSc.h -> build/lib.linux-x86_64-cpython-312/petsc4py copying src/petsc4py/include/petsc4py/numpy.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pybuffer.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/pyscalar.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib copying src/petsc4py/lib/__init__.pyi -> build/lib.linux-x86_64-cpython-312/petsc4py/lib running build_ext PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.2 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc writing build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg running install_lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/typing.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc_api.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__main__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/py.typed -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__init__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/petsc.cfg -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/__init__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/PETSc.cpython-312-x86_64-linux-gnu.so -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer/petscpyvista.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/viewer/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer copying build/lib.linux-x86_64-cpython-312/petsc4py/lib/_pytypes/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/numpy.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/pybuffer.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/petsc4py.i -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/pyscalar.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/include/petsc4py/petsc4py.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.pxd -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__main__.pyi -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py copying build/lib.linux-x86_64-cpython-312/petsc4py/PETSc.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/typing.py to typing.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/__main__.py to __main__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer/petscpyvista.py to petscpyvista.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/lib/_pytypes/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/PETSc.py to PETSc.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/petsc4py.egg-info writing src/petsc4py.egg-info/PKG-INFO writing dependency_links to src/petsc4py.egg-info/dependency_links.txt writing requirements to src/petsc4py.egg-info/requires.txt writing top-level names to src/petsc4py.egg-info/top_level.txt writing manifest file 'src/petsc4py.egg-info/SOURCES.txt' dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdualspace.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmswarm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmstag.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ptscotch.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/interpreter.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_viz_opendx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdraw.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/gpu_api_utils.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5VLnative.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_lapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_MultiVector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmcomposite.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/smumps_struc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5pubconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_LoadBalanceInverseOperator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/superlu_upacked.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_check.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_ElementByElement_SingleElement.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5PLpublic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_comminfoagx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_RowMatrix.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDioc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsctao_deprecations.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/mmio.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_operator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/machines.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_ParMETIS.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_pde.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_Krylov.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_FilterType.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5overflow.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/HYPRE_struct_ls.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_genP.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnestypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsftypes.h won't be automatically included in the manifest: the path must be relative dependency 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/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/deviceimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/drawimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petschpddm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapi.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbjkokkosimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmpleximpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapobj.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/bmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmlabelimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/veccupmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmstagimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/partitionerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashijklkey.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmswarmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/loghandlerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/sfimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewerhdf5impl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapijkl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/randomimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matorderimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashset.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/snesimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/tshistoryimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcstructsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matdensecupmimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/kspimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/logimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/glvisvecimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmpatchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/garbagecollector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/sectionimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/logimpldeprecated.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscadvancedmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/isimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapiv.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmproductimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmap.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/glvisviewerimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcgamgimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmplextransformimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/vieweradiosimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petschypre.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcmgimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashsetij.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/fortranimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcisimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscfvimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/linesearchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapijk.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/taolinesearchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/vecimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmnetworkimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcpatchimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/taoimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmdaimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmforestimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/mempoison.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/viewercgnsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashtable.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/matimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmfieldimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/tsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/f90impl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/pcbddcprivateimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/dmmbimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/characteristicimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/petscconvestimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsc/private/hashmapij.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscconf.h won't be automatically included in the manifest: the path must be relative reading manifest file 'src/petsc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.rst' writing manifest file 'src/petsc4py.egg-info/SOURCES.txt' Copying src/petsc4py.egg-info to /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py-3.23.0.dev0-py3.12.egg-info running install_scripts ===================================== To use petsc4py, add /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib to PYTHONPATH ===================================== gmake[3]: Nothing to be done for 'libmesh-install'. gmake[3]: Nothing to be done for 'mfem-install'. *** Building SLEPc *** Checking environment... done Checking PETSc installation... done Processing slepc4py... done Checking LAPACK library... done Checking FEAST... done Checking SCALAPACK... done Writing various configuration files... done ================================================================================ SLEPc Configuration ================================================================================ SLEPc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc It is a git repository on branch: remotes/origin/jose/test-petsc-branch~1 SLEPc prefix directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug Prefix install with double precision real numbers Python bindings (slepc4py) will be built after SLEPc FEAST from MKL linked by PETSc SCALAPACK from SCALAPACK linked by PETSc xxx==========================================================================xxx Configure stage complete. Now build the SLEPc library with: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug xxx==========================================================================xxx gmake[6]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' ========================================== Starting make run on dms12 at Sat, 07 Dec 2024 18:35:00 -0500 Machine characteristics: Linux dms12 6.8.0-49-generic #49-Ubuntu SMP PREEMPT_DYNAMIC Mon Nov 4 02:06:24 UTC 2024 x86_64 GNU/Linux ----------------------------------------- Using SLEPc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc Using PETSc directory: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug Using PETSc arch: installed-arch-linux2-c-debug ----------------------------------------- SLEPC_VERSION_RELEASE 0 SLEPC_VERSION_MAJOR 3 SLEPC_VERSION_MINOR 22 SLEPC_VERSION_SUBMINOR 1 SLEPC_VERSION_DATE "unknown" SLEPC_VERSION_GIT "unknown" SLEPC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using SLEPc configure options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-slepc4py=1 Using SLEPc configuration flags: #define SLEPC_PETSC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug" #define SLEPC_PETSC_ARCH "" #define SLEPC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc" #define SLEPC_LIB_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define SLEPC_VERSION_GIT "v3.22.1-20-g2e87c100e" #define SLEPC_VERSION_DATE_GIT "2024-11-09 02:45:10 +0000" #define SLEPC_VERSION_BRANCH_GIT "remotes/origin/jose/test-petsc-branch~1" #define SLEPC_HAVE_SLEPC4PY 1 #define SLEPC4PY_INSTALL_PATH /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib #define SLEPC_HAVE_FEAST 1 #define SLEPC_HAVE_SCALAPACK 1 #define SLEPC_SCALAPACK_HAVE_UNDERSCORE 1 #define SLEPC_HAVE_PACKAGES ":feast:scalapack:" ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 22 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" ----------------------------------------- Using PETSc configure options: --prefix=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug --with-mpi-compilers=1 --with-mpi-dir=/opt/mpi/openmpi-4.1.6-opt --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-fortran-bindings=0 --with-memalign=64 --with-petsc4py=yes --with-slepc4py=yes --with-python-exec=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 --have-numpy=yes --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-party=yes --download-spai=yes --download-superlu=yes --download-cmake=yes --download-hdf5=yes --download-hpddm=yes --download-hypre=yes --download-metis=yes --download-mumps=yes --download-parmetis=yes --download-ptscotch=yes --download-slepc=yes --download-strumpack=yes --download-suitesparse=yes --download-superlu_dist=yes --with-blaslapack-dir=/opt/intel/oneapi/mkl/2024.1/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack=1 --with-scalapack-include=/opt/intel/oneapi/mkl/2024.1/include --with-mkl_cpardiso-dir=/opt/intel/oneapi/mkl/2024.1 --with-scalapack-lib="-L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64" Using PETSc configuration flags: #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CMAKE 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_CXX_DIALECT_CXX20 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MKL_CPARDISO 1 #define PETSC_HAVE_MKL_INCLUDES 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_PARDISO 1 #define PETSC_HAVE_MKL_SET_NUM_THREADS 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_ML 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_COUNT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_NO_FINITE_MATH_ONLY 1 #define PETSC_HAVE_OPENMPI 1 #define PETSC_HAVE_PACKAGES ":amd:blaslapack:cholmod:cmake:hdf5:hpddm:hypre:klu:mathlib:metis:mkl_cpardiso:mkl_pardiso:mkl_sparse:mkl_sparse_optimize:ml:mpi:mumps:parmetis:party:pthread:ptscotch:regex:scalapack:spai:spqr:strumpack:superlu:superlu_dist:umfpack:x11:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARTY 1 #define PETSC_HAVE_PETSC4PY 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_MUTEX 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_DEFAULT 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SHMGET 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SPAI 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_STRUMPACK 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SUPERLU_DIST 1 #define PETSC_HAVE_SUPERLU_DIST_SINGLE 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_LIB_NAME_SUFFIX "" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 64 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/usr/bin/gmake --no-print-directory" #define PETSC_PETSC4PY_INSTALL_PATH "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2024-12-07 06:14:15 +0000" #define PETSC_VERSION_GIT "v3.22.2-222-gec335262" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C/C++ include paths: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include Using C compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -o .o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 mpicc -show: gcc -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using C++ compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -g -O0 -std=gnu++20 -fPIC -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpicxx -show: g++ -I/opt/mpi/openmpi-4.1.6-opt/include -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) Using Fortran include/module paths: -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include Using Fortran compile: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 -o .o -c -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include mpif90 -show: gfortran -I/opt/mpi/openmpi-4.1.6-opt/include -I/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath -Wl,/opt/mpi/openmpi-4.1.6-opt/lib -Wl,--enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Fortran compiler version: GNU Fortran (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3) ----------------------------------------- Using C/C++ linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc Using C/C++ flags: -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 Using Fortran linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpif90 Using Fortran flags: -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using libraries: -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc/installed-arch-linux2-c-debug/lib -lslepc -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -L/opt/intel/oneapi/mkl/2024.1/lib/intel64/intel64 -Wl,-rpath,/opt/mpi/openmpi-4.1.6-opt/lib -L/opt/mpi/openmpi-4.1.6-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13 -Wl,-rpath,/opt/intel/oneapi/mkl/2024.1/lib -L/opt/intel/oneapi/mkl/2024.1/lib -Wl,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lamd -lsuperlu_dist -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lsuperlu -lml -lspai -lmkl_intel_lp64 -lmkl_core -lmkl_gnu_thread -lmkl_blacs_openmpi_lp64 -lgomp -ldl -lpthread -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lparty -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lquadmath ------------------------------------------ Using mpiexec: /opt/mpi/openmpi-4.1.6-opt/bin/mpiexec --oversubscribe ------------------------------------------ Using MAKE: /usr/bin/gmake Default MAKEFLAGS: MAKE_NP:12 MAKE_LOAD:36.0 MAKEFLAGS: -j24 --jobserver-auth=fifo:/tmp/GMfifo4026820 --no-print-directory -- PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH=installed-arch-linux2-c-debug PETSC_INSTALL=install SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc ========================================== /usr/bin/gmake --print-directory -f gmakefile -l36.0 --output-sync=recurse V= slepc_libs gmake[7]: Entering directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/bin/python3 /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/share/petsc/examples/config/gmakegen.py --petsc-arch= --pkg-dir=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc --pkg-name=slepc --pkg-pkgs=sys,eps,svd,pep,nep,mfn,lme --pkg-arch=installed-arch-linux2-c-debug CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/dsutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/hz.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dibtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbiorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghep/dsghep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvkrylov.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dlaed3m.o Use "/usr/bin/gmake V=1" to see verbose compile lines, "/usr/bin/gmake V=0" to suppress. CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/contiguous/contig.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/mat/bvmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/vecs/vecs.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvblas.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/svec/svec.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dmerg2.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/invit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsbtdc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvfunc.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/bdc/dsrtdf.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvorthog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gnhep/dsgnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/gsvd/dsgsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvlapack.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/impls/tensor/bvtensor.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/ghiep/dsghiep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvcontour.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/combine/fncombine.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/invsqrt/fninvsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhepts/dsnhepts.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/phi/fnphi.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nhep/dsnhep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/pep/dspep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvglobal.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/log/fnlog.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hep/dshep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/fnutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/hsvd/dshsvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dspriv.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/sqrt/fnsqrt.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/rational/fnrational.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ellipse/rgellipse.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/svd/dssvd.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/impls/nep/dsnep.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/ds/interface/dsops.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/polygon/rgpolygon.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/interval/rginterval.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stregis.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shift/shift.o CC installed-arch-linux2-c-debug/obj/src/sys/dlregisslepc.o CC installed-arch-linux2-c-debug/obj/src/sys/finit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/sinvert/sinvert.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/shell/shell.o CC installed-arch-linux2-c-debug/obj/src/sys/mat/matstruct.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stshellmat.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/precond/precond.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/cayley/cayley.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/impls/ring/rgring.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stset.o CC installed-arch-linux2-c-debug/obj/src/sys/slepccontour.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filtlan.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/impls/exp/fnexp.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/impls/filter/filter.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/rg/interface/rgbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcsc.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcutil.o CC installed-arch-linux2-c-debug/obj/src/sys/slepcinit.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/fn/interface/fnbasic.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsles.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/pool.o CC installed-arch-linux2-c-debug/obj/src/sys/mat/matutil.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stsolve.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/bv/interface/bvbasic.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdtestconv.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdschm.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdinitv.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdgd2.o CC installed-arch-linux2-c-debug/obj/src/sys/classes/st/interface/stfunc.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/davidson.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/vecutil.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdutils.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/rqcg/rqcg.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdupdatev.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/scalapack/scalapack.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/arnoldi/arnoldi.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-indef.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/epskrylov.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdcalcpairs.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/cg/lobpcg/lobpcg.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lapack/lapack.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/gd/gd.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/dlregiseps.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-twosided.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsregis.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/dvdimprovex.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/davidson/jd/jd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/subspace/subspace.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsdefault.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/lanczos/lanczos.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsmon.o CC installed-arch-linux2-c-debug/obj/src/sys/vec/veccomp.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsbasic.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/external/scalapack/svdscalap.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/dlregissvd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/lyapii/lyapii.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/randomized/rsvd.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-bse.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lapack/svdlapack.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssetup.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/external/feast/feast.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/lanczos/gklanczos.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svddefault.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/ciss/ciss.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdregis.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cross/cross.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdbasic.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsview.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdmon.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/power/power.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epssolve.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/ks-slice.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/pepkrylov.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsetup.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/dlregispep.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/qeplin.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/peputils.o CC installed-arch-linux2-c-debug/obj/src/eps/impls/krylov/krylovschur/krylovschur.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdsolve.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/cyclic/cyclic.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdview.o CC installed-arch-linux2-c-debug/obj/src/eps/interface/epsopts.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/qarnoldi/qarnoldi.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepregis.o CC installed-arch-linux2-c-debug/obj/src/svd/interface/svdopts.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepmon.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepdefault.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepbasic.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/ptoar.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsetup.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/dlregisnep.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/narnoldi/narnoldi.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/stoar.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/interpol/interpol.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/peprefine.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/linear/linear.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepdefault.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs-fullb.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/stoar/qslice.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp-twosided.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepview.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepregis.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/slp/slp.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepmon.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/rii/rii.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/dlregismfn.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepresolv.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/krylov/mfnkrylov.o CC installed-arch-linux2-c-debug/obj/src/mfn/impls/expokit/mfnexpokit.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnregis.o CC installed-arch-linux2-c-debug/obj/src/svd/impls/trlanczos/trlanczos.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnmon.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsetup.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsetup.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/dlregislme.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/krylov/toar/nrefine.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnbasic.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nepdefl.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnsolve.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/neprefine.o CC installed-arch-linux2-c-debug/obj/src/pep/interface/pepopts.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeregis.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepbasic.o CC installed-arch-linux2-c-debug/obj/src/lme/impls/krylov/lmekrylov.o CC installed-arch-linux2-c-debug/obj/src/mfn/interface/mfnopts.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmebasic.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmemon.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesolve.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepview.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmesetup.o CC installed-arch-linux2-c-debug/obj/src/pep/impls/jd/pjd.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepopts.o CC installed-arch-linux2-c-debug/obj/src/nep/impls/nleigs/nleigs.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmeopts.o CC installed-arch-linux2-c-debug/obj/src/nep/interface/nepsolve.o CC installed-arch-linux2-c-debug/obj/src/lme/interface/lmedense.o CLINKER installed-arch-linux2-c-debug/lib/libslepc.so.3.022.1 gmake[7]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' gmake[6]: Leaving directory '/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc' Now to install the library do: make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug install ========================================= *** Installing SLEPc *** *** Installing SLEPc at prefix location: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug *** ==================================== Install complete. Now to check if the libraries are working do (in current directory): make SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH="" check ==================================== /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc install-builtafterslepc /usr/bin/gmake --no-print-directory -f makefile PETSC_ARCH=installed-arch-linux2-c-debug PETSC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug SLEPC_DIR=/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/repo-petsc-main-debug/arch-linux-c-debug/externalpackages/git.slepc slepc4py-install *** Building slepc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_src fetching build requirement 'Cython >= 3.0.0' using Cython 3.0.11 cythonizing 'slepc4py/SLEPc.pyx' -> 'slepc4py/SLEPc.c' running build_py creating build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py creating build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/SLEPc.pxd -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc_api.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.h -> build/lib.linux-x86_64-cpython-312/slepc4py creating build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.h -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.i -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/lib/slepc.cfg -> build/lib.linux-x86_64-cpython-312/slepc4py/lib running build_ext SLEPC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug version: 3.22.1 development PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.2 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc building 'SLEPc' extension creating build/temp.linux-x86_64-cpython-312/src/slepc4py /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -fPIC -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc -Isrc/slepc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib64/python3.12/site-packages/numpy/core/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/petsc4py/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/suitesparse -I/opt/intel/oneapi/mkl/2024.1/include -I/opt/mpi/openmpi-4.1.6-opt/include -I/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/include -I/usr/include/python3.12 -c src/slepc4py/SLEPc.c -o build/temp.linux-x86_64-cpython-312/src/slepc4py/SLEPc.o /opt/mpi/openmpi-4.1.6-opt/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -g3 -O0 -shared -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions build/temp.linux-x86_64-cpython-312/src/slepc4py/SLEPc.o -L/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -L/usr/lib64 -Wl,--enable-new-dtags,-rpath,/pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib -lslepc -lpetsc -o build/lib.linux-x86_64-cpython-312/slepc4py/lib/SLEPc.cpython-312-x86_64-linux-gnu.so writing build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg *** Installing slepc4py *** /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/virtual_env_python/lib/python3.12/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install running build running build_src running build_py copying src/slepc4py/SLEPc.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__main__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/slepc4py/lib copying src/slepc4py/SLEPc.pxd -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc_api.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/SLEPc.h -> build/lib.linux-x86_64-cpython-312/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.h -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py copying src/slepc4py/include/slepc4py/slepc4py.i -> build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py running build_ext SLEPC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug version: 3.22.1 development PETSC_DIR: /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug PETSC_ARCH: version: 3.22.2 development integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc linker: /opt/mpi/openmpi-4.1.6-opt/bin/mpicc writing build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg running install_lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc_api.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.pxd -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/__main__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/slepc.cfg -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/SLEPc.cpython-312-x86_64-linux-gnu.so -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib copying build/lib.linux-x86_64-cpython-312/slepc4py/lib/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include creating /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py/slepc4py.i -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/include/slepc4py/slepc4py.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/include/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/SLEPc.h -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py copying build/lib.linux-x86_64-cpython-312/slepc4py/__init__.py -> /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/SLEPc.py to SLEPc.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/__main__.py to __main__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/slepc4py.egg-info writing src/slepc4py.egg-info/PKG-INFO writing dependency_links to src/slepc4py.egg-info/dependency_links.txt writing requirements to src/slepc4py.egg-info/requires.txt writing top-level names to src/slepc4py.egg-info/top_level.txt writing manifest file 'src/slepc4py.egg-info/SOURCES.txt' dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdualspace.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmswarm.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmstag.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ptscotch.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/interpreter.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_viz_opendx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdraw.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcblaslapack_mangle.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/gpu_api_utils.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5VLnative.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_lapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_MultiVector.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscdmcomposite.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/smumps_struc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepccupmblas.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5pubconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_LoadBalanceInverseOperator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/superlu_upacked.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_check.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_ElementByElement_SingleElement.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5PLpublic.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscmacros.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_comminfoagx.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_RowMatrix.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDioc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petsctao_deprecations.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/mmio.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_operator.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/machines.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_ParMETIS.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcmat.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_pde.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/MLAPI_Krylov.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_FilterType.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5overflow.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscconf.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/HYPRE_struct_ls.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_agg_genP.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsnestypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscsftypes.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/hdf5.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDdevelop.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_cg.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscpctypes.h won't be automatically included in the manifest: the path must be relative dependency 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won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/H5FDmpio.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_aggregate.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/Epetra_Multi_CrsMatrix.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/ml_mls.h won't be automatically included in the manifest: the path must be relative dependency 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path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/petscpkg_version.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/vecimplslepc.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/rgimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/svdimpl.h won't be automatically included in the manifest: the path must be relative dependency 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be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/epsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/dsimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/mfnimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/stimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/slepcimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/slepcscalapack.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepc/private/fnimpl.h won't be automatically included in the manifest: the path must be relative dependency /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/include/slepcconf.h won't be automatically included in the manifest: the path must be relative reading manifest file 'src/slepc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.rst' writing manifest file 'src/slepc4py.egg-info/SOURCES.txt' Copying src/slepc4py.egg-info to /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib/slepc4py-3.23.0.dev0-py3.12.egg-info running install_scripts ===================================== To use slepc4py, add /pmi/cmpbib/compilation_BIB_fedora_39_petsc_master_mkl_openmpi_gpp/COMPILE_AUTO/petsc-main-debug/lib to PYTHONPATH ===================================== *** Building and installing HPDDM *** gmake[3]: Nothing to be done for 'amrex-install'. gmake[3]: Nothing to be done for 'bamg-install'.